Variant report

Variant	rs575627010
Chromosome Location	chrX:55934071-55934072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384643	chrX:55919980-55939813	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	esv2752678	chrX:55930768-56851953	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2753382	chrX:55930768-56851953	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2754448	chrX:55930768-56851953	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	esv2755974	chrX:55930768-56851953	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv432333	chrX:55930768-56851953	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55933600-55934400	Enhancers	Primary B cells from peripheral blood	blood
2	chrX:55933600-55936400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chrX:55933600-55939000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chrX:55933800-55934200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chrX:55933800-55934200	Enhancers	Fetal Intestine Small	intestine
6	chrX:55933800-55936200	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chrX:55934000-55934200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chrX:55934000-55934200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chrX:55934000-55934200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chrX:55934000-55934200	Enhancers	Fetal Intestine Large	intestine
11	chrX:55934000-55934200	Enhancers	Fetal Thymus	thymus
12	chrX:55934000-55934400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
13	chrX:55934000-55934400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chrX:55934000-55934400	Enhancers	Brain Cingulate Gyrus	brain
15	chrX:55934000-55934400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chrX:55934000-55936000	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chrX:55934000-55936000	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chrX:55934000-55936000	Active TSS	Rectal Smooth Muscle	rectum
19	chrX:55934000-55938800	Active TSS	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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