Variant report

Variant	rs57569155
Chromosome Location	chr11:101785837-101785838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55843109	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55854855	0.81[AFR][1000 genomes]
rs55986595	1.00[EUR][1000 genomes]
rs56249024	1.00[EUR][1000 genomes]
rs56292946	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57372648	1.00[ASN][1000 genomes]
rs57645509	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101784800-101786400	ZNF genes & repeats	Fetal Brain Male	brain
2	chr11:101784800-101786600	Active TSS	Rectal Smooth Muscle	rectum
3	chr11:101784800-101787800	Active TSS	Aorta	Aorta
4	chr11:101785000-101786400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:101785000-101786400	Active TSS	Psoas Muscle	Psoas
6	chr11:101785000-101786800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:101785000-101787000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:101785000-101787000	Active TSS	NHDF-Ad	bronchial
9	chr11:101785000-101787200	Active TSS	Brain Substantia Nigra	brain
10	chr11:101785000-101787200	Active TSS	Ovary	ovary
11	chr11:101785000-101787400	Active TSS	Stomach Smooth Muscle	stomach
12	chr11:101785000-101787800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:101785200-101786000	Active TSS	GM12878-XiMat	blood
14	chr11:101785200-101786200	Active TSS	Colonic Mucosa	Colon
15	chr11:101785200-101786200	Active TSS	Small Intestine	intestine
16	chr11:101785200-101786400	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr11:101785200-101786400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:101785200-101786400	Flanking Active TSS	Liver	Liver
19	chr11:101785200-101786400	Flanking Active TSS	Placenta	Placenta
20	chr11:101785200-101786400	Active TSS	Left Ventricle	heart
21	chr11:101785200-101786400	Active TSS	Sigmoid Colon	Sigmoid Colon
22	chr11:101785200-101786400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr11:101785200-101786600	Active TSS	H1 Cell Line	embryonic stem cell
24	chr11:101785200-101786600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:101785200-101786600	Active TSS	Colon Smooth Muscle	Colon
26	chr11:101785200-101786600	Active TSS	Fetal Muscle Trunk	muscle
27	chr11:101785200-101786800	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr11:101785200-101786800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:101785200-101786800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:101785200-101786800	Active TSS	Fetal Stomach	stomach
31	chr11:101785200-101787000	Active TSS	Fetal Kidney	kidney
32	chr11:101785200-101787000	Active TSS	NHLF	lung
33	chr11:101785200-101787200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:101785200-101787200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:101785200-101787200	Active TSS	Right Atrium	heart
36	chr11:101785200-101787400	Active TSS	Brain Angular Gyrus	brain
37	chr11:101785400-101786000	Flanking Active TSS	Pancreas	Pancrea
38	chr11:101785400-101786200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:101785400-101786200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:101785400-101786200	Active TSS	iPS-18 Cell Line	embryonic stem cell
41	chr11:101785400-101786200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
42	chr11:101785400-101786200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr11:101785400-101786200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr11:101785400-101786200	Active TSS	Fetal Heart	heart
45	chr11:101785400-101786200	Active TSS	Gastric	stomach
46	chr11:101785400-101786200	Active TSS	Lung	lung
47	chr11:101785400-101786200	Active TSS	Spleen	Spleen
48	chr11:101785400-101786400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr11:101785400-101786400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:101785400-101786400	Active TSS	H9 Cell Line	embryonic stem cell

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