Variant report

Variant	rs57372648
Chromosome Location	chr11:101786715-101786716
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57104749	0.91[EUR][1000 genomes]
rs57569155	1.00[ASN][1000 genomes]
rs57645509	1.00[ASN][1000 genomes]
rs58379466	0.91[EUR][1000 genomes]
rs61414150	0.91[EUR][1000 genomes]
rs61534871	0.91[EUR][1000 genomes]
rs61743062	0.91[EUR][1000 genomes]
rs7944180	0.91[EUR][1000 genomes]
rs7951294	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101784800-101787800	Active TSS	Aorta	Aorta
2	chr11:101785000-101786800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:101785000-101787000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:101785000-101787000	Active TSS	NHDF-Ad	bronchial
5	chr11:101785000-101787200	Active TSS	Brain Substantia Nigra	brain
6	chr11:101785000-101787200	Active TSS	Ovary	ovary
7	chr11:101785000-101787400	Active TSS	Stomach Smooth Muscle	stomach
8	chr11:101785000-101787800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:101785200-101786800	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr11:101785200-101786800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:101785200-101786800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:101785200-101786800	Active TSS	Fetal Stomach	stomach
13	chr11:101785200-101787000	Active TSS	Fetal Kidney	kidney
14	chr11:101785200-101787000	Active TSS	NHLF	lung
15	chr11:101785200-101787200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:101785200-101787200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:101785200-101787200	Active TSS	Right Atrium	heart
18	chr11:101785200-101787400	Active TSS	Brain Angular Gyrus	brain
19	chr11:101785400-101786800	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr11:101785400-101786800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:101785400-101786800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:101785400-101786800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:101785400-101786800	Active TSS	HSMMtube	muscle
24	chr11:101785400-101787000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:101785400-101787000	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr11:101785400-101787000	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr11:101785400-101787000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:101785400-101787000	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr11:101785400-101787000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:101785400-101787000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
31	chr11:101785400-101787000	Active TSS	Fetal Intestine Large	intestine
32	chr11:101785400-101787200	Active TSS	Brain Cingulate Gyrus	brain
33	chr11:101785400-101787200	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr11:101785400-101787200	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr11:101785400-101787200	Active TSS	Fetal Intestine Small	intestine
36	chr11:101785400-101787200	Active TSS	Fetal Muscle Leg	muscle
37	chr11:101785400-101787600	Active TSS	A549	lung
38	chr11:101785400-101788200	Active TSS	Fetal Brain Female	brain
39	chr11:101785400-101788600	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr11:101785400-101789000	Active TSS	Brain Anterior Caudate	brain
41	chr11:101785600-101786800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:101785600-101786800	Active TSS	Duodenum Mucosa	Duodenum
43	chr11:101785600-101786800	Active TSS	Placenta Amnion	Placenta Amnion
44	chr11:101785600-101786800	Active TSS	Thymus	Thymus
45	chr11:101785600-101786800	Active TSS	HepG2	liver
46	chr11:101785600-101787000	Active TSS	Rectal Mucosa Donor 31	rectum
47	chr11:101785600-101787200	Active TSS	Fetal Lung	lung
48	chr11:101785600-101787200	Active TSS	Rectal Mucosa Donor 29	rectum
49	chr11:101786000-101787200	Flanking Active TSS	Dnd41	blood
50	chr11:101786200-101786800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

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