Variant report

Variant	rs61743062
Chromosome Location	chr11:101829006-101829007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55854855	1.00[AMR][1000 genomes]
rs57104749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57372648	0.91[EUR][1000 genomes]
rs58379466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61414150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61534871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7944180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7951294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv469989	chr11:101790671-101857758	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv556140	chr11:101790671-101857758	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101787400-101839200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:101787400-101861200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr11:101787400-101866000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:101788200-101837800	Weak transcription	HUVEC	blood vessel
5	chr11:101798400-101829200	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:101800400-101830200	Weak transcription	Fetal Lung	lung
7	chr11:101812200-101866600	Weak transcription	Fetal Brain Male	brain
8	chr11:101813000-101831600	Weak transcription	Brain Angular Gyrus	brain
9	chr11:101814200-101835800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:101816400-101835400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:101817800-101831600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr11:101818400-101833600	Weak transcription	A549	lung
13	chr11:101818800-101836400	Weak transcription	Primary B cells from cord blood	blood
14	chr11:101819200-101829600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:101820000-101832400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:101820000-101833800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:101820400-101836000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:101820600-101863800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:101821000-101834400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:101821200-101878400	Weak transcription	Brain Anterior Caudate	brain
21	chr11:101822200-101841400	Weak transcription	Psoas Muscle	Psoas
22	chr11:101822800-101836000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:101823200-101829600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr11:101825000-101829200	Weak transcription	Osteobl	bone
25	chr11:101825600-101836600	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:101825800-101834400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr11:101826000-101830800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:101826200-101833000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:101826400-101829800	Strong transcription	Adipose Nuclei	Adipose
30	chr11:101827200-101883400	Weak transcription	Aorta	Aorta
31	chr11:101827800-101830800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:101828200-101831200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:101828400-101830600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:101828800-101830200	Strong transcription	Ovary	ovary
35	chr11:101829000-101831600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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