Variant report

Variant	rs57104749
Chromosome Location	chr11:101816920-101816921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55854855	1.00[AMR][1000 genomes]
rs57372648	0.91[EUR][1000 genomes]
rs58379466	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61414150	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61534871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61743062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7944180	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7951294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv469989	chr11:101790671-101857758	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv556140	chr11:101790671-101857758	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101787200-101820200	Weak transcription	Brain Substantia Nigra	brain
2	chr11:101787400-101818800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:101787400-101820400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:101787400-101827800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:101787400-101839200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:101787400-101861200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:101787400-101866000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:101788200-101837800	Weak transcription	HUVEC	blood vessel
9	chr11:101798400-101829200	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:101800400-101826400	Weak transcription	Aorta	Aorta
11	chr11:101800400-101830200	Weak transcription	Fetal Lung	lung
12	chr11:101800600-101820400	Weak transcription	Brain Anterior Caudate	brain
13	chr11:101812200-101866600	Weak transcription	Fetal Brain Male	brain
14	chr11:101813000-101831600	Weak transcription	Brain Angular Gyrus	brain
15	chr11:101813600-101818800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:101814200-101835800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:101815200-101817200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:101815400-101822000	Weak transcription	Psoas Muscle	Psoas
19	chr11:101815600-101817200	Strong transcription	Adipose Nuclei	Adipose
20	chr11:101815800-101817200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:101816000-101817200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:101816400-101817200	Strong transcription	Ovary	ovary
23	chr11:101816400-101835400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:101816600-101817200	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr11:101816600-101820000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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