Variant report

Variant	rs575744399
Chromosome Location	chr6:25085898-25085899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:25085806-25086379	HUVEC	blood vessel:	n/a	n/a
2	JUN	chr6:25085726-25086366	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25085087..25087243-chr6:25089273..25091853,2	K562	blood:

Variant related genes	Relation type
CMAHP	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv830610	chr6:24951741-25124239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv830611	chr6:25039374-25199112	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv470806	chr6:25082262-25156197	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv462662	chr6:25084718-25165486	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv601166	chr6:25084718-25165486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25077000-25086600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:25079400-25093000	Weak transcription	Ovary	ovary
3	chr6:25079600-25086800	Weak transcription	Aorta	Aorta
4	chr6:25079800-25086800	Weak transcription	Spleen	Spleen
5	chr6:25080400-25098000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:25081000-25086600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:25081200-25092000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:25081600-25088800	Weak transcription	Osteobl	bone
9	chr6:25082200-25094800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:25082600-25105200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:25082800-25086000	Weak transcription	GM12878-XiMat	blood
12	chr6:25083000-25086000	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr6:25083000-25086800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:25083800-25089800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:25083800-25093200	Weak transcription	Colonic Mucosa	Colon
16	chr6:25084000-25087600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:25084200-25087000	Enhancers	Liver	Liver
18	chr6:25084200-25089800	Weak transcription	Hela-S3	cervix
19	chr6:25084800-25086000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:25084800-25086600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:25084800-25086800	Weak transcription	Left Ventricle	heart
22	chr6:25084800-25088400	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr6:25084800-25099000	Weak transcription	Fetal Intestine Large	intestine
24	chr6:25084800-25113800	Weak transcription	Gastric	stomach
25	chr6:25085000-25086400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr6:25085000-25086600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:25085000-25086600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:25085000-25086600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:25085000-25086600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:25085000-25086800	Weak transcription	HSMMtube	muscle
31	chr6:25085000-25087000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:25085000-25088600	Weak transcription	Lung	lung
33	chr6:25085000-25088600	Enhancers	HUVEC	blood vessel
34	chr6:25085200-25086200	Weak transcription	Thymus	Thymus
35	chr6:25085200-25086600	Weak transcription	Adipose Nuclei	Adipose
36	chr6:25085200-25086800	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr6:25085200-25086800	Weak transcription	Small Intestine	intestine
38	chr6:25085200-25087600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:25085200-25087600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr6:25085200-25088000	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr6:25085200-25089400	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr6:25085200-25108000	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:25085400-25086200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:25085400-25086600	Weak transcription	Fetal Thymus	thymus
45	chr6:25085400-25086600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:25085400-25087200	Enhancers	Primary hematopoietic stem cells	blood
47	chr6:25085400-25088200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr6:25085400-25091600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr6:25085600-25086400	Weak transcription	Placenta	Placenta
50	chr6:25085600-25086800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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