Variant report

Variant	rs57579890
Chromosome Location	chr7:21233853-21233854
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10950841	0.82[ASN][1000 genomes]
rs12665947	1.00[EUR][1000 genomes]
rs12666010	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12671297	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12674300	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17144012	0.86[ASN][1000 genomes]
rs2390476	1.00[EUR][1000 genomes]
rs34111257	1.00[EUR][1000 genomes]
rs4140957	1.00[EUR][1000 genomes]
rs4140958	1.00[EUR][1000 genomes]
rs4721987	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4721989	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4721990	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4721991	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4721999	1.00[AMR][1000 genomes]
rs73685049	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478244	chr7:21044211-21417347	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3478245	chr7:21044211-21417347	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1020852	chr7:21060791-21375050	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv538799	chr7:21060791-21375050	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21233400-21234200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:21233400-21234200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:21233600-21234400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:21233600-21235400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:21233600-21244400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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