Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12665947	0.84[ASN][1000 genomes]
rs12666010	0.87[ASN][1000 genomes]
rs12671297	1.00[ASN][1000 genomes]
rs12674300	1.00[ASN][1000 genomes]
rs2390476	0.84[ASN][1000 genomes]
rs4140957	0.84[ASN][1000 genomes]
rs4140958	0.84[ASN][1000 genomes]
rs4721987	1.00[ASN][1000 genomes]
rs4721989	0.80[ASN][1000 genomes]
rs4721990	0.80[ASN][1000 genomes]
rs4721991	0.81[ASN][1000 genomes]
rs56254784	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57579890	0.82[ASN][1000 genomes]
rs59014331	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6461539	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6461540	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6461541	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6953600	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6961300	0.97[EUR][1000 genomes]
rs6965229	0.95[EUR][1000 genomes]
rs6965777	0.95[EUR][1000 genomes]
rs6975922	0.95[EUR][1000 genomes]
rs73279510	0.97[EUR][1000 genomes]
rs73279539	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73685049	0.81[ASN][1000 genomes]
rs7792457	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830920	chr7:21014535-21201580	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3478244	chr7:21044211-21417347	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3478245	chr7:21044211-21417347	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1020852	chr7:21060791-21375050	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv538799	chr7:21060791-21375050	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21186600-21200200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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