Variant report

Variant	rs59014331
Chromosome Location	chr7:21207848-21207849
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10950841	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4473915	0.90[AFR][1000 genomes]
rs56254784	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6461539	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6461540	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6461541	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6953600	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6961300	0.98[EUR][1000 genomes]
rs6965229	0.97[EUR][1000 genomes]
rs6965777	0.97[EUR][1000 genomes]
rs6975922	0.97[EUR][1000 genomes]
rs73279510	0.98[EUR][1000 genomes]
rs73279539	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7792457	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7792870	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478244	chr7:21044211-21417347	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3478245	chr7:21044211-21417347	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1020852	chr7:21060791-21375050	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv538799	chr7:21060791-21375050	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21206400-21208200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:21206600-21208200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr7:21207000-21208200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:21207200-21208200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:21207600-21208000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr7:21207600-21208000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:21207600-21208600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:21207800-21208000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:21207800-21208000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:21207800-21208000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:21207800-21208800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr7:21207800-21208800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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