The 2.0 version of rSNPBase

Variant report

Variant rs57585457
Chromosome Location chr19:38555193-38555194
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38528200-38573200 Weak transcription Left Ventricle heart
2 chr19:38539000-38572000 Weak transcription Right Ventricle heart
3 chr19:38539200-38591200 Weak transcription Small Intestine intestine
4 chr19:38543800-38563200 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr19:38546600-38572200 Weak transcription Fetal Adrenal Gland Adrenal Gland
6 chr19:38547000-38563600 Weak transcription Fetal Lung lung
7 chr19:38547200-38561400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr19:38549200-38564800 Weak transcription iPS-18 Cell Line embryonic stem cell
9 chr19:38549200-38572000 Weak transcription Liver Liver
10 chr19:38549400-38560000 Weak transcription Psoas Muscle Psoas
11 chr19:38549600-38572600 Weak transcription Thymus Thymus
12 chr19:38550000-38561000 Weak transcription Hela-S3 cervix
13 chr19:38550000-38570400 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr19:38550800-38563400 Weak transcription Spleen Spleen
15 chr19:38550800-38565200 Weak transcription Duodenum Mucosa Duodenum
16 chr19:38550800-38570000 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr19:38550800-38572200 Weak transcription Colonic Mucosa Colon
18 chr19:38550800-38590000 Weak transcription Rectal Smooth Muscle rectum
19 chr19:38551000-38556000 Genic enhancers Primary B cells from peripheral blood blood
20 chr19:38551000-38572000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr19:38551200-38555600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
22 chr19:38551200-38562200 Weak transcription Primary T cells from cord blood blood
23 chr19:38551200-38562600 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr19:38551200-38563600 Weak transcription Primary neutrophils fromperipheralblood blood
25 chr19:38551200-38567000 Weak transcription Primary hematopoietic stem cells blood
26 chr19:38551200-38613800 Weak transcription Primary T killer memory cells from peripheral blood blood
27 chr19:38551400-38562400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr19:38551400-38567000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr19:38552200-38556000 Strong transcription Primary B cells from cord blood blood
30 chr19:38552400-38560800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr19:38552400-38561000 Weak transcription NHEK skin
32 chr19:38552400-38561200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr19:38552600-38555400 Weak transcription Osteobl bone
34 chr19:38552600-38559800 Weak transcription HSMMtube muscle
35 chr19:38552800-38560000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr19:38553000-38559400 Strong transcription A549 lung
37 chr19:38553000-38559600 Weak transcription Primary hematopoietic stem cells short term culture blood
38 chr19:38553000-38559800 Weak transcription NHDF-Ad bronchial
39 chr19:38553200-38570400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr19:38553600-38557800 Weak transcription GM12878-XiMat blood
41 chr19:38553800-38561200 Weak transcription NH-A brain
42 chr19:38553800-38561400 Weak transcription Esophagus oesophagus
43 chr19:38553800-38561400 Weak transcription Lung lung
44 chr19:38553800-38572000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr19:38554200-38556200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr19:38554200-38561400 Weak transcription Pancreas Pancrea
47 chr19:38554200-38572600 Weak transcription Placenta Amnion Placenta Amnion
48 chr19:38554400-38559600 Weak transcription Gastric stomach
49 chr19:38554400-38560000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr19:38554400-38561000 Weak transcription Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015