The 2.0 version of rSNPBase

Variant report

Variant rs855619
Chromosome Location chr19:38564913-38564914
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38528200-38573200 Weak transcription Left Ventricle heart
2 chr19:38539000-38572000 Weak transcription Right Ventricle heart
3 chr19:38539200-38591200 Weak transcription Small Intestine intestine
4 chr19:38546600-38572200 Weak transcription Fetal Adrenal Gland Adrenal Gland
5 chr19:38549200-38572000 Weak transcription Liver Liver
6 chr19:38549600-38572600 Weak transcription Thymus Thymus
7 chr19:38550000-38570400 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr19:38550800-38565200 Weak transcription Duodenum Mucosa Duodenum
9 chr19:38550800-38570000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr19:38550800-38572200 Weak transcription Colonic Mucosa Colon
11 chr19:38550800-38590000 Weak transcription Rectal Smooth Muscle rectum
12 chr19:38551000-38572000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr19:38551200-38567000 Weak transcription Primary hematopoietic stem cells blood
14 chr19:38551200-38613800 Weak transcription Primary T killer memory cells from peripheral blood blood
15 chr19:38551400-38567000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
16 chr19:38553200-38570400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr19:38553800-38572000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr19:38554200-38572600 Weak transcription Placenta Amnion Placenta Amnion
19 chr19:38554600-38567000 Weak transcription Stomach Smooth Muscle stomach
20 chr19:38554600-38570400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
21 chr19:38554600-38571800 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr19:38554800-38571800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
23 chr19:38554800-38573200 Weak transcription Brain Angular Gyrus brain
24 chr19:38554800-38580200 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr19:38555000-38570800 Weak transcription Fetal Intestine Large intestine
26 chr19:38561200-38570800 Weak transcription H9 Cell Line embryonic stem cell
27 chr19:38561400-38570400 Weak transcription Hela-S3 cervix
28 chr19:38561600-38565400 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
29 chr19:38561600-38567200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr19:38561600-38570000 Weak transcription NHLF lung
31 chr19:38561600-38570000 Weak transcription Osteobl bone
32 chr19:38561600-38570600 Weak transcription HUES64 Cell Line embryonic stem cell
33 chr19:38561800-38567000 Weak transcription Pancreas Pancrea
34 chr19:38561800-38570000 Weak transcription Muscle Satellite Cultured Cells --
35 chr19:38561800-38570200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr19:38561800-38570200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr19:38561800-38570400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr19:38561800-38570400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr19:38561800-38570400 Weak transcription Esophagus oesophagus
40 chr19:38561800-38570400 Weak transcription Lung lung
41 chr19:38561800-38570400 Weak transcription HMEC breast
42 chr19:38561800-38570400 Weak transcription NHEK skin
43 chr19:38562200-38565600 Strong transcription Cortex derived primary cultured neurospheres brain
44 chr19:38562400-38565000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr19:38562400-38565200 Strong transcription Primary B cells from cord blood blood
46 chr19:38562400-38565600 Strong transcription Primary B cells from peripheral blood blood
47 chr19:38562400-38565800 Strong transcription Fetal Intestine Small intestine
48 chr19:38562400-38570400 Weak transcription Placenta Placenta
49 chr19:38562600-38565400 Strong transcription GM12878-XiMat blood
50 chr19:38562600-38570400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015