The 2.0 version of rSNPBase

Variant report

Variant rs58152231
Chromosome Location chr19:38576106-38576107
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38539200-38591200 Weak transcription Small Intestine intestine
2 chr19:38550800-38590000 Weak transcription Rectal Smooth Muscle rectum
3 chr19:38551200-38613800 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr19:38554800-38580200 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr19:38564800-38579000 Weak transcription Fetal Lung lung
6 chr19:38565000-38579200 Weak transcription Brain Substantia Nigra brain
7 chr19:38565600-38588400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr19:38567600-38605400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
9 chr19:38568000-38590200 Strong transcription Fetal Intestine Small intestine
10 chr19:38570600-38579000 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr19:38570800-38584000 Weak transcription Right Atrium heart
12 chr19:38570800-38590200 Weak transcription Fetal Thymus thymus
13 chr19:38571000-38580800 Weak transcription Hela-S3 cervix
14 chr19:38571000-38590000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr19:38571000-38590200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr19:38571200-38578800 Weak transcription Primary T helper cells PMA-I stimulated --
17 chr19:38571200-38579400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr19:38571200-38580000 Weak transcription HSMMtube muscle
19 chr19:38571200-38580200 Weak transcription H9 Cell Line embryonic stem cell
20 chr19:38571200-38590200 Weak transcription HMEC breast
21 chr19:38571200-38590200 Weak transcription NHEK skin
22 chr19:38571400-38579200 Weak transcription HUES64 Cell Line embryonic stem cell
23 chr19:38571400-38579200 Weak transcription HepG2 liver
24 chr19:38571400-38586000 Strong transcription A549 lung
25 chr19:38571600-38579200 Weak transcription iPS-18 Cell Line embryonic stem cell
26 chr19:38571800-38582600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr19:38571800-38585000 Strong transcription Primary hematopoietic stem cells short term culture blood
28 chr19:38571800-38585400 Strong transcription Fetal Stomach stomach
29 chr19:38571800-38586000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr19:38571800-38586600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr19:38572000-38585800 Strong transcription Primary B cells from peripheral blood blood
32 chr19:38572000-38586000 Weak transcription ES-I3 Cell Line embryonic stem cell
33 chr19:38572200-38576200 Weak transcription HSMM muscle
34 chr19:38572200-38579000 Weak transcription NH-A brain
35 chr19:38572200-38585800 Weak transcription NHDF-Ad bronchial
36 chr19:38572400-38579400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr19:38572400-38581400 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr19:38573400-38577400 Weak transcription Primary hematopoietic stem cells blood
39 chr19:38573600-38586000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
40 chr19:38573600-38590000 Weak transcription Primary T regulatory cells fromperipheralblood blood
41 chr19:38573600-38610000 Strong transcription Fetal Intestine Large intestine
42 chr19:38573800-38578600 Weak transcription Ovary ovary
43 chr19:38573800-38579000 Weak transcription Colonic Mucosa Colon
44 chr19:38573800-38579200 Weak transcription Primary neutrophils fromperipheralblood blood
45 chr19:38573800-38584000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr19:38574000-38577800 Weak transcription Primary T cells fromperipheralblood blood
47 chr19:38574000-38578800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
48 chr19:38574000-38578800 Weak transcription Brain Hippocampus Middle brain
49 chr19:38574000-38578800 Weak transcription Gastric stomach
50 chr19:38574000-38578800 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015