The 2.0 version of rSNPBase

Variant report

Variant rs1568975
Chromosome Location chr19:38573802-38573803
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38539200-38591200 Weak transcription Small Intestine intestine
2 chr19:38550800-38590000 Weak transcription Rectal Smooth Muscle rectum
3 chr19:38551200-38613800 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr19:38554800-38580200 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr19:38564800-38579000 Weak transcription Fetal Lung lung
6 chr19:38565000-38579200 Weak transcription Brain Substantia Nigra brain
7 chr19:38565600-38588400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr19:38567600-38605400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
9 chr19:38568000-38590200 Strong transcription Fetal Intestine Small intestine
10 chr19:38570400-38574400 Strong transcription Breast Myoepithelial Primary Cells Breast
11 chr19:38570600-38579000 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr19:38570800-38584000 Weak transcription Right Atrium heart
13 chr19:38570800-38590200 Weak transcription Fetal Thymus thymus
14 chr19:38571000-38574600 Weak transcription Placenta Placenta
15 chr19:38571000-38580800 Weak transcription Hela-S3 cervix
16 chr19:38571000-38590000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr19:38571000-38590200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr19:38571200-38578800 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr19:38571200-38579400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr19:38571200-38580000 Weak transcription HSMMtube muscle
21 chr19:38571200-38580200 Weak transcription H9 Cell Line embryonic stem cell
22 chr19:38571200-38590200 Weak transcription HMEC breast
23 chr19:38571200-38590200 Weak transcription NHEK skin
24 chr19:38571400-38579200 Weak transcription HUES64 Cell Line embryonic stem cell
25 chr19:38571400-38579200 Weak transcription HepG2 liver
26 chr19:38571400-38586000 Strong transcription A549 lung
27 chr19:38571600-38575200 Strong transcription Cortex derived primary cultured neurospheres brain
28 chr19:38571600-38579200 Weak transcription iPS-18 Cell Line embryonic stem cell
29 chr19:38571800-38574000 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
30 chr19:38571800-38574000 Strong transcription Aorta Aorta
31 chr19:38571800-38574000 Strong transcription Esophagus oesophagus
32 chr19:38571800-38574000 Strong transcription Skeletal Muscle Male skeletal muscle
33 chr19:38571800-38574000 Strong transcription Spleen Spleen
34 chr19:38571800-38574200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr19:38571800-38574200 Strong transcription Primary T helper cells fromperipheralblood blood
36 chr19:38571800-38574400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
37 chr19:38571800-38574400 Strong transcription Sigmoid Colon Sigmoid Colon
38 chr19:38571800-38575000 Strong transcription Primary T cells from cord blood blood
39 chr19:38571800-38575000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
40 chr19:38571800-38575000 Strong transcription Duodenum Mucosa Duodenum
41 chr19:38571800-38575000 Strong transcription Rectal Mucosa Donor 29 rectum
42 chr19:38571800-38575800 Strong transcription Primary B cells from cord blood blood
43 chr19:38571800-38582600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr19:38571800-38585000 Strong transcription Primary hematopoietic stem cells short term culture blood
45 chr19:38571800-38585400 Strong transcription Fetal Stomach stomach
46 chr19:38571800-38586000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr19:38571800-38586600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr19:38572000-38574000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
49 chr19:38572000-38574000 Strong transcription Adipose Nuclei Adipose
50 chr19:38572000-38574000 Strong transcription Brain Cingulate Gyrus brain

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Last update: Aug 31, 2015