Variant report

Variant	rs575884677
Chromosome Location	chr3:105306019-105306020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv534224	chr3:105141696-105404293	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv829651	chr3:105203424-105402136	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv460811	chr3:105212993-105316769	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv591240	chr3:105212993-105316769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv1012669	chr3:105290140-105321201	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	miRNA target site	n/a	inside rSNPs	n/a
7	nsv877305	chr3:105298379-105362282	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2763727	chr3:105299778-105364508	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1002164	chr3:105300233-105351011	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv528578	chr3:105300908-105343015	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv591241	chr3:105300908-105353145	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3491966	chr3:105305077-105311431	Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv3409731	chr3:105305784-105311142	Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv3491967	chr3:105305838-105311107	Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv3491965	chr3:105305849-105311080	Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv3462312	chr3:105305870-105311130	Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv3369614	chr3:105305876-105311113	Weak transcription	n/a	n/a	inside rSNPs	n/a
18	esv7287	chr3:105305902-105311117	Weak transcription	n/a	n/a	inside rSNPs	n/a
19	esv3462311	chr3:105305926-105311096	Weak transcription	n/a	n/a	inside rSNPs	n/a
20	esv3423590	chr3:105305930-105311106	Weak transcription	n/a	n/a	inside rSNPs	n/a
21	esv3462310	chr3:105305937-105311056	Weak transcription	n/a	n/a	inside rSNPs	n/a
22	esv3444135	chr3:105305941-105311084	Weak transcription	n/a	n/a	inside rSNPs	n/a
23	esv3462313	chr3:105305994-105311043	Weak transcription	n/a	n/a	inside rSNPs	n/a
24	esv3491968	chr3:105305994-105311043	Weak transcription	n/a	n/a	inside rSNPs	n/a
25	esv1599519	chr3:105306019-105306021	Weak transcription	n/a	n/a	inside rSNPs	n/a
26	nsv229596	chr3:105306020-105306021	Weak transcription	n/a	n/a	inside rSNPs	n/a
27	esv1917272	chr3:105306020-105306022	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105272200-105312800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:105300000-105307800	Weak transcription	HSMM	muscle

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