Variant report

Variant	rs57594261
Chromosome Location	chr15:78001521-78001522
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:34)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:34 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr15:78001487-78001826	K562	blood:	n/a	n/a
2	REST	chr15:78001078-78002137	ECC-1	luminal epithelium:	n/a	n/a
3	REST	chr15:78001346-78002009	PANC-1	pancreas:	n/a	n/a
4	REST	chr15:78001458-78001864	H1-hESC	embryonic stem cell:	n/a	n/a
5	REST	chr15:78001385-78001935	HL-60	blood:	n/a	n/a
6	REST	chr15:78001500-78001809	PFSK-1	brain:	n/a	n/a
7	REST	chr15:78001472-78001825	HepG2	liver:	n/a	n/a
8	REST	chr15:78001383-78001918	PANC-1	pancreas:	n/a	n/a
9	REST	chr15:78001503-78002083	Hela-S3	cervix:	n/a	n/a
10	REST	chr15:78001432-78001936	U87	brain:	n/a	n/a
11	REST	chr15:78001220-78002036	MCF-7	breast:	n/a	n/a
12	MAZ	chr15:78001489-78001837	K562	blood:	n/a	n/a
13	REST	chr15:78001412-78001951	HCT-116	colon:	n/a	n/a
14	ZNF143	chr15:78001519-78001809	K562	blood:	n/a	n/a
15	REST	chr15:78001439-78001822	H1-hESC	embryonic stem cell:	n/a	n/a
16	REST	chr15:78001407-78002075	K562	blood:	n/a	n/a
17	REST	chr15:78001358-78001959	HCT-116	colon:	n/a	n/a
18	TEAD4	chr15:78001361-78001893	A549	lung:	n/a	n/a
19	REST	chr15:78001198-78002133	ECC-1	luminal epithelium:	n/a	n/a
20	REST	chr15:78001371-78001923	GM12878	blood:	n/a	n/a
21	REST	chr15:78001214-78002139	PFSK-1	brain:	n/a	n/a
22	REST	chr15:78001289-78001978	PANC-1	pancreas:	n/a	n/a
23	REST	chr15:78001490-78001847	SK-N-SH	brain:	n/a	n/a
24	REST	chr15:78001487-78001788	K562	blood:	n/a	n/a
25	REST	chr15:78001381-78001871	Hela-S3	cervix:	n/a	n/a
26	REST	chr15:78001459-78001870	A549	lung:	n/a	n/a
27	REST	chr15:78001391-78001891	HepG2	liver:	n/a	n/a
28	REST	chr15:78001463-78001920	PFSK-1	brain:	n/a	n/a
29	REST	chr15:78001287-78002183	A549	lung:	n/a	n/a
30	REST	chr15:78001408-78001906	SK-N-SH	brain:	n/a	n/a
31	REST	chr15:78001471-78001938	U87	brain:	n/a	n/a
32	REST	chr15:78001246-78002193	HL-60	blood:	n/a	n/a
33	REST	chr15:78001275-78002027	PFSK-1	brain:	n/a	n/a
34	REST	chr15:78001356-78002056	MCF-7	breast:	n/a	n/a

No data

Variant related genes	Relation type
LINGO1	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs56314140	1.00[AMR][1000 genomes]
rs56343471	1.00[AMR][1000 genomes]
rs56844012	1.00[AMR][1000 genomes]
rs56952924	1.00[AMR][1000 genomes]
rs57548921	1.00[AMR][1000 genomes]
rs57603227	1.00[AMR][1000 genomes]
rs58398016	1.00[AMR][1000 genomes]
rs58469778	1.00[AMR][1000 genomes]
rs58711165	1.00[AMR][1000 genomes]
rs58768836	1.00[AMR][1000 genomes]
rs58838783	1.00[AMR][1000 genomes]
rs59287349	1.00[AMR][1000 genomes]
rs59391272	1.00[AMR][1000 genomes]
rs59912838	1.00[AMR][1000 genomes]
rs60096962	1.00[AMR][1000 genomes]
rs60602435	1.00[AMR][1000 genomes]
rs60706078	1.00[AMR][1000 genomes]
rs60973601	1.00[AMR][1000 genomes]
rs73455712	1.00[AMR][1000 genomes]
rs73455720	1.00[AMR][1000 genomes]
rs73455780	1.00[AMR][1000 genomes]
rs73455799	1.00[AMR][1000 genomes]
rs73457716	1.00[AMR][1000 genomes]
rs73457852	1.00[AMR][1000 genomes]
rs73457862	1.00[AMR][1000 genomes]
rs73457865	1.00[AMR][1000 genomes]
rs73465808	1.00[AMR][1000 genomes]
rs73465815	1.00[AMR][1000 genomes]
rs73465817	1.00[AMR][1000 genomes]
rs73465837	1.00[AMR][1000 genomes]
rs73465849	1.00[AMR][1000 genomes]
rs73465855	1.00[AMR][1000 genomes]
rs73465863	1.00[AMR][1000 genomes]
rs74025336	1.00[AMR][1000 genomes]
rs74025396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv570141	chr15:77985554-78017361	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv570142	chr15:77993282-78010746	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv570143	chr15:77993282-78017361	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv833061	chr15:77998374-78121905	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv570144	chr15:77999436-78010949	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv570145	chr15:77999436-78012025	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77969200-78007600	Weak transcription	Right Atrium	heart
2	chr15:77992200-78002200	Weak transcription	Fetal Brain Male	brain
3	chr15:77994800-78002000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:77995400-78004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:77999400-78003600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:77999800-78003600	Weak transcription	Brain Angular Gyrus	brain
7	chr15:78000200-78002200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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