Variant report

Variant	rs59287349
Chromosome Location	chr15:77949695-77949696
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77948459..77951097-chr15:78104975..78107913,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs56314140	1.00[AMR][1000 genomes]
rs56343471	1.00[AMR][1000 genomes]
rs56844012	1.00[AMR][1000 genomes]
rs56952924	1.00[AMR][1000 genomes]
rs57548921	1.00[AMR][1000 genomes]
rs57594261	1.00[AMR][1000 genomes]
rs57603227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58398016	1.00[AMR][1000 genomes]
rs58469778	1.00[AMR][1000 genomes]
rs58711165	1.00[AMR][1000 genomes]
rs58768836	1.00[AMR][1000 genomes]
rs58838783	1.00[AMR][1000 genomes]
rs59391272	1.00[AMR][1000 genomes]
rs59912838	1.00[AMR][1000 genomes]
rs60096962	1.00[AMR][1000 genomes]
rs60602435	1.00[AMR][1000 genomes]
rs60706078	1.00[AMR][1000 genomes]
rs60973601	1.00[AMR][1000 genomes]
rs73455712	1.00[AMR][1000 genomes]
rs73455720	1.00[AMR][1000 genomes]
rs73455780	1.00[AMR][1000 genomes]
rs73455799	1.00[AMR][1000 genomes]
rs73457716	1.00[AMR][1000 genomes]
rs73457852	1.00[AMR][1000 genomes]
rs73457862	1.00[AMR][1000 genomes]
rs73457865	1.00[AMR][1000 genomes]
rs73465808	1.00[AMR][1000 genomes]
rs73465815	1.00[AMR][1000 genomes]
rs73465817	1.00[AMR][1000 genomes]
rs73465837	1.00[AMR][1000 genomes]
rs73465849	1.00[AMR][1000 genomes]
rs73465855	1.00[AMR][1000 genomes]
rs73465863	1.00[AMR][1000 genomes]
rs74025336	1.00[AMR][1000 genomes]
rs74025396	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77943200-77951800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:77947000-77951000	Weak transcription	Fetal Intestine Small	intestine
3	chr15:77947000-77965200	Enhancers	Fetal Brain Male	brain
4	chr15:77947200-77949800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:77947400-77950800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr15:77947400-77951800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:77947800-77951000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:77948400-77950600	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr15:77948400-77952400	Weak transcription	Brain Anterior Caudate	brain
10	chr15:77948800-77952400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:77949200-77950200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:77949200-77956200	Enhancers	Fetal Brain Female	brain
13	chr15:77949400-77956800	Weak transcription	Spleen	Spleen
14	chr15:77949600-77949800	Enhancers	Brain Angular Gyrus	brain
15	chr15:77949600-77950800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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