Variant report

Variant	rs57596280
Chromosome Location	chr6:133645590-133645591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55920655	1.00[AMR][1000 genomes]
rs59503527	1.00[AMR][1000 genomes]
rs59708477	1.00[AMR][1000 genomes]
rs6940500	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773573	1.00[AMR][1000 genomes]
rs73776015	1.00[AMR][1000 genomes]
rs73776020	1.00[AMR][1000 genomes]
rs73776030	1.00[AMR][1000 genomes]
rs73776034	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133613000-133655000	Weak transcription	Hela-S3	cervix
2	chr6:133638200-133646400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:133639200-133646200	Weak transcription	Psoas Muscle	Psoas
4	chr6:133640200-133647200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:133643200-133658200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:133643800-133646200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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