Variant report

Variant	rs6940500
Chromosome Location	chr6:133661798-133661799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55920655	1.00[AMR][1000 genomes]
rs57596280	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59503527	1.00[AMR][1000 genomes]
rs59708477	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773573	1.00[AMR][1000 genomes]
rs73776015	1.00[AMR][1000 genomes]
rs73776020	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776030	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776034	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133654600-133667800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:133658400-133662800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:133659000-133663000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:133660000-133662000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:133660000-133662200	Enhancers	Psoas Muscle	Psoas
6	chr6:133660400-133664000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:133660800-133662400	Enhancers	HMEC	breast
8	chr6:133661200-133663400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:133661200-133663400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:133661400-133662800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:133661400-133663400	Enhancers	Osteobl	bone
12	chr6:133661400-133663600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:133661400-133663800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:133661600-133662400	Flanking Active TSS	Hela-S3	cervix
15	chr6:133661600-133662400	Enhancers	HSMMtube	muscle
16	chr6:133661600-133663400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr6:133661600-133663400	Flanking Active TSS	A549	lung
18	chr6:133661600-133663600	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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