Variant report

Variant	rs57597535
Chromosome Location	chr12:40134766-40134767
allele	-/ATT/TAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11830326	1.00[EUR][1000 genomes]
rs4573758	1.00[AMR][1000 genomes]
rs4631951	1.00[AMR][1000 genomes]
rs60191587	1.00[AMR][1000 genomes]
rs61188330	1.00[AMR][1000 genomes]
rs61328583	1.00[AMR][1000 genomes]
rs61448501	1.00[AMR][1000 genomes]
rs73268364	1.00[AMR][1000 genomes]
rs73268367	1.00[AMR][1000 genomes]
rs73270411	1.00[AMR][1000 genomes]
rs73270422	1.00[AMR][1000 genomes]
rs73270464	1.00[AMR][1000 genomes]
rs74086403	1.00[AMR][1000 genomes]
rs74086422	1.00[AMR][1000 genomes]
rs74086425	1.00[AMR][1000 genomes]
rs74090316	1.00[AMR][1000 genomes]
rs74090323	1.00[AMR][1000 genomes]
rs74090331	1.00[AMR][1000 genomes]
rs74090336	1.00[AMR][1000 genomes]
rs74090342	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1037457	chr12:39898349-40245401	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv541480	chr12:39898349-40245401	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv899024	chr12:40046408-40188870	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1053603	chr12:40082673-40197609	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv427907	chr12:40122713-40199621	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv428280	chr12:40122713-40199621	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40130800-40137000	Weak transcription	Liver	Liver
2	chr12:40130800-40156400	Weak transcription	Rectal Mucosa Donor 31	rectum

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