Variant report

Variant	rs57613458
Chromosome Location	chr5:147609132-147609133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10042118	0.94[ASN][1000 genomes]
rs10074211	0.97[ASN][1000 genomes]
rs10075715	0.94[ASN][1000 genomes]
rs1549884	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2400501	0.94[ASN][1000 genomes]
rs2400507	1.00[AMR][1000 genomes]
rs61618834	0.94[ASN][1000 genomes]
rs6580539	1.00[ASN][1000 genomes]
rs6580540	0.94[ASN][1000 genomes]
rs6580541	0.94[ASN][1000 genomes]
rs6879289	0.94[ASN][1000 genomes]
rs7708548	0.94[ASN][1000 genomes]
rs969366	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147608400-147610000	Strong transcription	Hela-S3	cervix
2	chr5:147608600-147610400	Active TSS	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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