Variant report

Variant	rs57616127
Chromosome Location	chr4:26962456-26962457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs57003503	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1000568	chr4:26886920-27049554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26911600-26965800	Weak transcription	HMEC	breast
2	chr4:26923200-26965800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:26923200-26977200	Weak transcription	Thymus	Thymus
4	chr4:26938600-26969000	Weak transcription	Gastric	stomach
5	chr4:26938800-26965600	Weak transcription	NHLF	lung
6	chr4:26939200-26969000	Weak transcription	Pancreas	Pancrea
7	chr4:26944400-26965600	Weak transcription	Brain Anterior Caudate	brain
8	chr4:26949200-26965600	Weak transcription	NH-A	brain
9	chr4:26949400-26963400	Weak transcription	Lung	lung
10	chr4:26950000-26980200	Weak transcription	Spleen	Spleen
11	chr4:26950200-26979400	Weak transcription	Ovary	ovary
12	chr4:26952600-26965600	Weak transcription	Psoas Muscle	Psoas
13	chr4:26952800-26963400	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:26955400-26962600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:26955400-26963600	Weak transcription	HSMMtube	muscle
16	chr4:26955600-26963000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:26955600-26965600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:26955600-26965600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:26955600-26965600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:26955600-26965600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:26955600-26965600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:26955600-26965600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr4:26955600-26966400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:26956000-26966400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr4:26957400-26964600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:26957400-26966600	Weak transcription	Small Intestine	intestine
27	chr4:26957600-26964200	Weak transcription	Fetal Lung	lung
28	chr4:26958000-26965600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:26958600-26965600	Weak transcription	Brain Angular Gyrus	brain
30	chr4:26958600-26965800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:26959000-26966400	Weak transcription	Liver	Liver
32	chr4:26959200-26963400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr4:26959200-26977600	Weak transcription	Fetal Thymus	thymus
34	chr4:26959400-26964000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr4:26959800-26963400	Strong transcription	Primary B cells from peripheral blood	blood
36	chr4:26960600-26963400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr4:26961000-26977200	Weak transcription	Fetal Intestine Small	intestine
38	chr4:26961200-26963000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr4:26961200-26963000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr4:26961200-26965600	Weak transcription	HSMM	muscle
41	chr4:26961400-26962800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr4:26961400-26965600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr4:26961400-26966000	Weak transcription	GM12878-XiMat	blood
44	chr4:26961600-26963000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr4:26961600-26965600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr4:26961600-26966000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:26961600-26967000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr4:26961600-26967400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr4:26961600-26967600	Weak transcription	Dnd41	blood
50	chr4:26961600-26969600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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