Variant report

Variant	rs57003503
Chromosome Location	chr4:26822593-26822594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1641557	1.00[AMR][1000 genomes]
rs260938	1.00[AMR][1000 genomes]
rs260953	1.00[AMR][1000 genomes]
rs4298123	1.00[AMR][1000 genomes]
rs4339196	1.00[AMR][1000 genomes]
rs4352465	1.00[AMR][1000 genomes]
rs57616127	1.00[AMR][1000 genomes]
rs6448463	1.00[AMR][1000 genomes]
rs6841960	1.00[AMR][1000 genomes]
rs7677298	1.00[AMR][1000 genomes]
rs7688132	1.00[AMR][1000 genomes]
rs7691219	1.00[AMR][1000 genomes]
rs9942266	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1005550	chr4:26778410-26824285	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26808000-26823200	Weak transcription	Fetal Intestine Small	intestine
2	chr4:26814000-26823400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:26814200-26823200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:26814800-26834200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:26815600-26823600	Weak transcription	Fetal Brain Female	brain
6	chr4:26816000-26823600	Weak transcription	Fetal Lung	lung
7	chr4:26817800-26823200	Weak transcription	Left Ventricle	heart
8	chr4:26817800-26823400	Weak transcription	Aorta	Aorta
9	chr4:26818200-26823200	Weak transcription	Stomach Mucosa	stomach
10	chr4:26820000-26823400	Weak transcription	Fetal Stomach	stomach
11	chr4:26821200-26823400	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:26821200-26825000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:26821400-26825600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:26822400-26822800	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links