Variant report

Variant	rs4352465
Chromosome Location	chr4:26694267-26694268
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1641557	1.00[AMR][1000 genomes]
rs260938	1.00[AMR][1000 genomes]
rs260943	0.88[YRI][hapmap]
rs260953	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4298123	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4339196	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4373146	0.82[AFR][1000 genomes]
rs4446297	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4616737	0.87[AFR][1000 genomes]
rs57003503	1.00[AMR][1000 genomes]
rs6448463	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6827599	0.89[AFR][1000 genomes]
rs6841960	1.00[AMR][1000 genomes]
rs7672457	0.87[AFR][1000 genomes]
rs7676873	0.88[YRI][hapmap]
rs7677298	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7688132	0.87[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7691219	0.87[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9942266	0.87[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1822380	chr4:26690284-26726780	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
3	chr4:26681400-26694800	Weak transcription	Fetal Intestine Large	intestine
4	chr4:26681400-26695200	Weak transcription	Lung	lung
5	chr4:26681400-26695400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr4:26681400-26697000	Weak transcription	Esophagus	oesophagus
7	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:26681600-26695600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:26681800-26695800	Weak transcription	Brain Germinal Matrix	brain
10	chr4:26681800-26696000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:26681800-26696800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:26681800-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:26681800-26724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:26683200-26695600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:26684000-26694400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr4:26684000-26695000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr4:26684400-26732400	Weak transcription	Fetal Kidney	kidney
18	chr4:26686200-26695000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr4:26686200-26696400	Weak transcription	Gastric	stomach
20	chr4:26687000-26727000	Weak transcription	Left Ventricle	heart
21	chr4:26689000-26694400	Weak transcription	Fetal Brain Male	brain
22	chr4:26689600-26696600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:26690000-26696800	Weak transcription	NHEK	skin
24	chr4:26690200-26694800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr4:26691200-26695800	Strong transcription	Fetal Thymus	thymus
26	chr4:26692200-26694800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr4:26692200-26695000	Weak transcription	Thymus	Thymus
28	chr4:26692200-26696800	Weak transcription	Psoas Muscle	Psoas
29	chr4:26692200-26697200	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr4:26692200-26698600	Weak transcription	Primary T cells from cord blood	blood
31	chr4:26692200-26712200	Weak transcription	Brain Hippocampus Middle	brain
32	chr4:26692400-26696400	Weak transcription	Fetal Brain Female	brain
33	chr4:26692400-26726400	Weak transcription	Ovary	ovary
34	chr4:26692600-26694600	Enhancers	K562	blood
35	chr4:26692800-26694600	Weak transcription	Brain Substantia Nigra	brain
36	chr4:26692800-26695000	Weak transcription	Primary B cells from cord blood	blood
37	chr4:26692800-26699600	Weak transcription	Dnd41	blood
38	chr4:26693000-26697200	Weak transcription	Adipose Nuclei	Adipose
39	chr4:26693000-26711000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr4:26693000-26716000	Weak transcription	HSMM	muscle
41	chr4:26693200-26695000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:26693400-26694400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr4:26693400-26695800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr4:26693400-26703000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:26693600-26696200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr4:26693800-26694400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr4:26693800-26694400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr4:26693800-26694400	Enhancers	NHDF-Ad	bronchial
49	chr4:26693800-26695000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:26694000-26694400	Enhancers	HMEC	breast

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