Variant report

Variant	rs4616737
Chromosome Location	chr4:26731290-26731291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26730217..26732508-chr4:26733966..26736527,2	K562	blood:
2	chr4:26729012..26731714-chr4:26789563..26791272,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4298123	0.82[AFR][1000 genomes]
rs4339196	0.80[AFR][1000 genomes]
rs4352465	0.87[AFR][1000 genomes]
rs4373146	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4446297	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6448463	0.87[AFR][1000 genomes]
rs6827599	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7672457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7677298	0.87[AFR][1000 genomes]
rs7688132	0.87[AFR][1000 genomes]
rs7691219	0.82[AFR][1000 genomes]
rs9942266	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
2	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:26684400-26732400	Weak transcription	Fetal Kidney	kidney
4	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
5	chr4:26705400-26753200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:26709000-26750000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:26711200-26745200	Weak transcription	Fetal Intestine Large	intestine
8	chr4:26711200-26750000	Weak transcription	Adipose Nuclei	Adipose
9	chr4:26711400-26771800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:26711600-26746200	Weak transcription	Dnd41	blood
11	chr4:26715600-26732200	Weak transcription	Fetal Stomach	stomach
12	chr4:26716200-26750200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:26716800-26748400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr4:26717600-26732200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:26718000-26754400	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:26719200-26735400	Weak transcription	Fetal Brain Male	brain
17	chr4:26719200-26736200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:26719200-26743200	Weak transcription	NHLF	lung
19	chr4:26719200-26744400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:26719400-26732400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:26719400-26732600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:26719400-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr4:26719600-26732800	Weak transcription	NHEK	skin
24	chr4:26719600-26749800	Weak transcription	HMEC	breast
25	chr4:26720400-26732600	Weak transcription	NHDF-Ad	bronchial
26	chr4:26720400-26750000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr4:26722200-26743600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:26722400-26734800	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:26722600-26748800	Weak transcription	Primary B cells from cord blood	blood
30	chr4:26722600-26758800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr4:26723000-26744800	Weak transcription	Brain Anterior Caudate	brain
32	chr4:26723400-26781000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr4:26723600-26764200	Weak transcription	Fetal Intestine Small	intestine
34	chr4:26724000-26772000	Weak transcription	Brain Angular Gyrus	brain
35	chr4:26725600-26731400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:26725800-26732600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:26725800-26734800	Weak transcription	Spleen	Spleen
38	chr4:26726000-26732800	Weak transcription	HSMMtube	muscle
39	chr4:26726400-26744600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr4:26726600-26738400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr4:26726800-26732200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr4:26726800-26734800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr4:26726800-26736400	Weak transcription	Primary T cells from cord blood	blood
44	chr4:26726800-26750200	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr4:26726800-26751000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr4:26727200-26732400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:26727200-26756600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr4:26727400-26732200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr4:26727400-26732200	Weak transcription	Thymus	Thymus
50	chr4:26727400-26773800	Weak transcription	Left Ventricle	heart

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