Variant report

Variant	rs6827599
Chromosome Location	chr4:26754886-26754887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4298123	0.84[AFR][1000 genomes]
rs4339196	0.83[AFR][1000 genomes]
rs4352465	0.89[AFR][1000 genomes]
rs4373146	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4446297	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4616737	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6448463	0.89[AFR][1000 genomes]
rs7672457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7677298	0.89[AFR][1000 genomes]
rs7688132	0.89[AFR][1000 genomes]
rs7691219	0.84[AFR][1000 genomes]
rs9942266	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:26711400-26771800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:26719400-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:26722600-26758800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:26723400-26781000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:26723600-26764200	Weak transcription	Fetal Intestine Small	intestine
7	chr4:26724000-26772000	Weak transcription	Brain Angular Gyrus	brain
8	chr4:26727200-26756600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr4:26727400-26773800	Weak transcription	Left Ventricle	heart
10	chr4:26727400-26775400	Weak transcription	Right Ventricle	heart
11	chr4:26732600-26773800	Weak transcription	Aorta	Aorta
12	chr4:26733000-26755000	Weak transcription	NH-A	brain
13	chr4:26737800-26755400	Weak transcription	Right Atrium	heart
14	chr4:26738600-26758400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:26743400-26755000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:26743400-26755000	Weak transcription	NHLF	lung
17	chr4:26744400-26775400	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:26745200-26775400	Weak transcription	Brain Anterior Caudate	brain
19	chr4:26746400-26789600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr4:26746600-26757600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr4:26746600-26761600	Weak transcription	Dnd41	blood
22	chr4:26746800-26767000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr4:26747600-26773800	Weak transcription	Pancreas	Pancrea
24	chr4:26747600-26775400	Weak transcription	Small Intestine	intestine
25	chr4:26748000-26780200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:26748200-26773600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr4:26748200-26789000	Weak transcription	Gastric	stomach
28	chr4:26748600-26755200	Weak transcription	Ovary	ovary
29	chr4:26748600-26755800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr4:26748600-26757000	Weak transcription	Esophagus	oesophagus
31	chr4:26748600-26773800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:26748800-26766600	Weak transcription	K562	blood
33	chr4:26748800-26772200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr4:26748800-26775400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr4:26749200-26765400	Weak transcription	Spleen	Spleen
36	chr4:26749400-26781000	Weak transcription	NHDF-Ad	bronchial
37	chr4:26749600-26755000	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr4:26749800-26755800	Strong transcription	Fetal Thymus	thymus
39	chr4:26749800-26762000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:26749800-26762000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr4:26749800-26789200	Weak transcription	Fetal Kidney	kidney
42	chr4:26750200-26755200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr4:26750200-26761800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:26750400-26755600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr4:26750600-26756000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr4:26750600-26757800	Weak transcription	Primary T cells from cord blood	blood
47	chr4:26750600-26772800	Weak transcription	Adipose Nuclei	Adipose
48	chr4:26750600-26774200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr4:26750600-26780000	Weak transcription	HMEC	breast
50	chr4:26750600-26781000	Weak transcription	Lung	lung

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