Variant report

Variant	rs4339196
Chromosome Location	chr4:26692388-26692389
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1641557	1.00[AMR][1000 genomes]
rs260938	1.00[AMR][1000 genomes]
rs260953	1.00[AMR][1000 genomes]
rs4298123	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4352465	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4616737	0.80[AFR][1000 genomes]
rs57003503	1.00[AMR][1000 genomes]
rs6448463	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6827599	0.83[AFR][1000 genomes]
rs6841960	1.00[AMR][1000 genomes]
rs7672457	0.80[AFR][1000 genomes]
rs7677298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7688132	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7691219	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9942266	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1822380	chr4:26690284-26726780	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:26663800-26694000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
4	chr4:26681400-26693000	Weak transcription	Fetal Stomach	stomach
5	chr4:26681400-26694800	Weak transcription	Fetal Intestine Large	intestine
6	chr4:26681400-26695200	Weak transcription	Lung	lung
7	chr4:26681400-26695400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr4:26681400-26697000	Weak transcription	Esophagus	oesophagus
9	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr4:26681600-26693600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:26681600-26695600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:26681800-26693800	Weak transcription	Fetal Intestine Small	intestine
13	chr4:26681800-26694200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:26681800-26694200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:26681800-26695800	Weak transcription	Brain Germinal Matrix	brain
16	chr4:26681800-26696000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:26681800-26696800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:26681800-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:26681800-26724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr4:26682000-26693800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr4:26683200-26695600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:26684000-26693400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr4:26684000-26694400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr4:26684000-26695000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr4:26684400-26692800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr4:26684400-26693800	Weak transcription	Pancreas	Pancrea
27	chr4:26684400-26732400	Weak transcription	Fetal Kidney	kidney
28	chr4:26686200-26692600	Weak transcription	Fetal Muscle Leg	muscle
29	chr4:26686200-26694000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:26686200-26695000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr4:26686200-26696400	Weak transcription	Gastric	stomach
32	chr4:26686800-26693800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr4:26687000-26727000	Weak transcription	Left Ventricle	heart
34	chr4:26687400-26694200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr4:26689000-26694400	Weak transcription	Fetal Brain Male	brain
36	chr4:26689600-26696600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr4:26690000-26696800	Weak transcription	NHEK	skin
38	chr4:26690200-26694000	Weak transcription	NH-A	brain
39	chr4:26690200-26694800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr4:26690400-26692800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr4:26690600-26692600	Weak transcription	K562	blood
42	chr4:26690800-26692800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr4:26691000-26693000	Strong transcription	HSMM	muscle
44	chr4:26691000-26693400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:26691000-26693400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr4:26691000-26693800	Strong transcription	Osteobl	bone
47	chr4:26691200-26692400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr4:26691200-26692400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr4:26691200-26692800	Strong transcription	Dnd41	blood
50	chr4:26691200-26693600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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