Variant report

Variant	rs57620146
Chromosome Location	chr11:15593919-15593920
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11602523	0.88[AFR][1000 genomes]
rs2882570	0.88[AFR][1000 genomes]
rs59751872	1.00[AMR][1000 genomes]
rs7104500	1.00[AMR][1000 genomes]
rs7107544	1.00[AMR][1000 genomes]
rs7119473	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15585200-15610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15588200-15606000	Weak transcription	Left Ventricle	heart
3	chr11:15591800-15595600	Weak transcription	Psoas Muscle	Psoas
4	chr11:15592000-15595400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:15592400-15601200	Weak transcription	Right Atrium	heart
6	chr11:15592800-15596000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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