Variant report

Variant	rs11602523
Chromosome Location	chr11:15585488-15585489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10500816	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832447	0.83[EUR][1000 genomes]
rs10832475	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832476	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832479	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023610	0.80[AMR][1000 genomes]
rs11023611	0.80[AMR][1000 genomes]
rs11023613	0.80[AMR][1000 genomes]
rs11023614	0.80[AMR][1000 genomes]
rs11023615	0.80[AMR][1000 genomes]
rs11023617	0.80[AMR][1000 genomes]
rs11023618	0.80[AMR][1000 genomes]
rs11023631	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023632	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023633	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023634	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023635	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023637	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023638	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12360670	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366179	0.80[AMR][1000 genomes]
rs16931632	0.91[ASN][1000 genomes]
rs17438762	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2351045	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351047	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351097	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2882570	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4338491	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55890157	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57259840	0.81[ASN][1000 genomes]
rs57620146	0.88[AFR][1000 genomes]
rs59596795	0.91[ASN][1000 genomes]
rs59739905	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7120322	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72868268	0.80[AMR][1000 genomes]
rs72869600	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926379	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7944494	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15574000-15591600	Weak transcription	Right Atrium	heart
2	chr11:15581000-15586800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:15581200-15587000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:15581800-15591000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:15583000-15587800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:15584400-15585600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:15584400-15585600	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:15584600-15585600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr11:15584800-15585800	Enhancers	Brain Substantia Nigra	brain
10	chr11:15585000-15585600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:15585000-15590800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:15585200-15586200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:15585200-15610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:15585400-15585600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:15585400-15586400	Weak transcription	Brain Germinal Matrix	brain
16	chr11:15585400-15587200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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