Variant report

Variant	rs12360670
Chromosome Location	chr11:15572237-15572238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr11:15571847-15572311	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000254946	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10500816	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832447	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10832475	0.95[ASN][1000 genomes]
rs10832476	0.95[ASN][1000 genomes]
rs10832479	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023602	0.81[EUR][1000 genomes]
rs11023603	0.81[EUR][1000 genomes]
rs11023610	0.83[EUR][1000 genomes]
rs11023611	0.83[EUR][1000 genomes]
rs11023613	0.83[EUR][1000 genomes]
rs11023614	0.83[EUR][1000 genomes]
rs11023615	0.83[EUR][1000 genomes]
rs11023617	0.83[EUR][1000 genomes]
rs11023618	0.83[EUR][1000 genomes]
rs11023631	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023632	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023633	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023634	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023635	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023637	0.95[ASN][1000 genomes]
rs11023638	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11602523	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366179	0.83[EUR][1000 genomes]
rs16931632	0.91[ASN][1000 genomes]
rs17438762	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2351045	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351047	1.00[ASN][1000 genomes]
rs2351097	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2882570	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4338491	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55890157	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57259840	0.81[ASN][1000 genomes]
rs59596795	0.91[ASN][1000 genomes]
rs59739905	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7120322	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72868268	0.83[EUR][1000 genomes]
rs72869600	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926379	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7944494	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15562800-15581000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:15569400-15573600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:15569600-15573400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:15569800-15573600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:15570000-15573600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:15570200-15573400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:15572000-15573800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:15572200-15572800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:15572200-15573800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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