Variant report

Variant	rs72869600
Chromosome Location	chr11:15585795-15585796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10500816	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766256	0.84[EUR][1000 genomes]
rs10766259	0.84[EUR][1000 genomes]
rs10832445	0.84[EUR][1000 genomes]
rs10832450	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10832453	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10832454	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10832455	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10832456	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10832475	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832476	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832479	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023591	0.84[EUR][1000 genomes]
rs11023592	0.84[EUR][1000 genomes]
rs11023594	0.84[EUR][1000 genomes]
rs11023602	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11023603	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11023610	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11023611	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11023613	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11023614	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11023615	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11023617	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11023618	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11023631	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023632	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023633	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023634	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023635	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023637	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023638	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11602523	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290607	0.85[EUR][1000 genomes]
rs12360670	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363765	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12365899	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12366179	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16931632	0.91[ASN][1000 genomes]
rs17438762	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2351045	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351047	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351097	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2882570	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129902	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4338491	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55693485	0.82[EUR][1000 genomes]
rs55890157	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57259840	0.81[ASN][1000 genomes]
rs59596795	0.91[ASN][1000 genomes]
rs59739905	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7120322	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72866609	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72868214	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72868268	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7481938	0.84[EUR][1000 genomes]
rs7926379	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938802	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7944494	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15574000-15591600	Weak transcription	Right Atrium	heart
2	chr11:15581000-15586800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:15581200-15587000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:15581800-15591000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:15583000-15587800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:15584800-15585800	Enhancers	Brain Substantia Nigra	brain
7	chr11:15585000-15590800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:15585200-15586200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:15585200-15610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:15585400-15586400	Weak transcription	Brain Germinal Matrix	brain
11	chr11:15585400-15587200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:15585600-15586600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links