Variant report

Variant	rs72868214
Chromosome Location	chr11:15523161-15523162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10500816	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10766256	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766259	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832445	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832447	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832450	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832453	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832454	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832455	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832456	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832475	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10832476	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11023591	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023592	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023594	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023602	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11023603	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023610	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023611	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023613	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023614	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023615	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023617	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023618	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023631	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11023632	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11023633	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11023634	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11023637	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12290607	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12363765	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12365899	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12366179	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351047	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2351097	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4129902	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4338491	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55693485	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55890157	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7120322	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72866609	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72868268	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72869600	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7481938	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7926379	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7938802	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7944494	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809270	chr11:15504338-15528140	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15514600-15523200	Enhancers	Fetal Intestine Large	intestine
2	chr11:15521800-15523800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:15522400-15523200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr11:15522400-15523200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:15522400-15524800	Weak transcription	Fetal Intestine Small	intestine
6	chr11:15522800-15523200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:15522800-15525200	Weak transcription	Placenta	Placenta

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