Variant report

Variant	rs10832456
Chromosome Location	chr11:15520317-15520318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15519281..15521349-chr11:15523623..15525618,2	MCF-7	breast:
2	chr11:15512584..15515913-chr11:15518069..15521001,3	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10500816	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10766256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766259	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832445	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832447	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832450	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832475	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10832476	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11023591	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023592	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023594	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023602	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11023603	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023610	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023611	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023613	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023614	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023615	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023617	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023618	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023631	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11023632	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11023633	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11023634	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11023637	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12290607	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12363765	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12365899	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12366179	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351047	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2351097	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4129902	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4338491	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55693485	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55890157	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7120322	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72866609	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72868214	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72868268	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72869600	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7481938	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7926379	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7938802	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7944494	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809270	chr11:15504338-15528140	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15512200-15520400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:15514600-15523200	Enhancers	Fetal Intestine Large	intestine
3	chr11:15514800-15522400	Enhancers	Fetal Intestine Small	intestine
4	chr11:15515800-15522000	Weak transcription	Placenta	Placenta
5	chr11:15519400-15521200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:15519400-15521200	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:15519400-15521200	Weak transcription	Psoas Muscle	Psoas
8	chr11:15519600-15522600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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