Variant report

Variant	rs57623331
Chromosome Location	chr9:6757929-6757930
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr9:6757046-6758297	HCT-116	colon:	n/a	chr9:6757939-6757948 chr9:6757941-6757950 chr9:6757938-6757951 chr9:6757940-6757949 chr9:6757940-6757949
2	NRF1	chr9:6756711-6758439	SK-N-SH	brain:	n/a	chr9:6758069-6758083 chr9:6758066-6758080 chr9:6758071-6758080 chr9:6758069-6758080 chr9:6758069-6758080
3	HEY1	chr9:6756547-6758372	HepG2	liver:	n/a	chr9:6758226-6758241
4	STAT3	chr9:6757677-6758321	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr9:6757029-6758404	Hela-S3	cervix:	n/a	n/a
6	REST	chr9:6757062-6759180	H1-neurons	neurons:	n/a	chr9:6758947-6758957 chr9:6757528-6757535 chr9:6757704-6757724 chr9:6757530-6757537 chr9:6758761-6758774
7	GATA2	chr9:6757122-6758223	SH-SY5Y	brain:	n/a	chr9:6757313-6757321
8	POLR2A	chr9:6756834-6759167	GM19193	blood:	n/a	n/a
9	FOS	chr9:6756990-6758105	K562	blood:	n/a	chr9:6757913-6757922 chr9:6757365-6757375 chr9:6757366-6757374 chr9:6757364-6757375
10	PML	chr9:6756826-6757990	K562	blood:	n/a	chr9:6757914-6757923
11	GABPA	chr9:6757460-6758059	A549	lung:	n/a	n/a
12	SIN3AK20	chr9:6757255-6758229	K562	blood:	n/a	n/a
13	FOXA1	chr9:6756878-6758092	HepG2	liver:	n/a	n/a
14	EBF1	chr9:6757585-6758467	GM12878	blood:	n/a	n/a
15	POLR2A	chr9:6757029-6758376	GM10847	blood:	n/a	n/a
16	ATF3	chr9:6757549-6758137	H1-hESC	embryonic stem cell:	n/a	chr9:6757929-6757949 chr9:6757940-6757960 chr9:6757949-6757958 chr9:6757940-6757949 chr9:6757953-6757962
17	UBTF	chr9:6756972-6759495	K562	blood:	n/a	n/a
18	RUNX3	chr9:6756913-6759653	GM12878	blood:	n/a	chr9:6759258-6759273
19	POLR2A	chr9:6757225-6758169	HUVEC	blood vessel:	n/a	n/a
20	POLR2A	chr9:6756819-6758107	U87	brain:	n/a	n/a
21	USF2	chr9:6757642-6758130	K562	blood:	n/a	chr9:6757939-6757948 chr9:6757941-6757950 chr9:6757938-6757951 chr9:6757938-6757949 chr9:6757940-6757949 chr9:6757907-6757918 chr9:6757940-6757949
22	SIN3AK20	chr9:6757304-6758223	PFSK-1	brain:	n/a	n/a
23	NFATC1	chr9:6756931-6758029	GM12878	blood:	n/a	chr9:6757772-6757786 chr9:6757468-6757482
24	NFIC	chr9:6756987-6758273	HepG2	liver:	n/a	n/a
25	SMARCB1	chr9:6757167-6759095	Hela-S3	cervix:	n/a	chr9:6757913-6757922
26	POLR2A	chr9:6757149-6758115	ECC-1	luminal epithelium:	n/a	n/a
27	USF1	chr9:6757259-6758224	SK-N-SH	brain:	n/a	chr9:6757939-6757948 chr9:6757941-6757950 chr9:6757938-6757951 chr9:6757940-6757949 chr9:6757940-6757949
28	POLR2A	chr9:6756752-6758324	GM12891	blood:	n/a	n/a
29	SRF	chr9:6757741-6758021	GM12878	blood:	n/a	n/a
30	TEAD4	chr9:6756941-6758021	HepG2	liver:	n/a	n/a
31	E2F6	chr9:6757231-6758145	K562	blood:	n/a	chr9:6757952-6757966 chr9:6757984-6757998 chr9:6758070-6758079
32	ETS1	chr9:6757686-6757951	A549	lung:	n/a	chr9:6757719-6757729 chr9:6757719-6757730
33	POLR2A	chr9:6756829-6758283	GM12878	blood:	n/a	n/a
34	USF1	chr9:6757500-6758302	GM12878	blood:	n/a	chr9:6757939-6757948 chr9:6757941-6757950 chr9:6757938-6757951 chr9:6757940-6757949 chr9:6757940-6757949
35	NFE2	chr9:6757751-6758111	K562	blood:	n/a	chr9:6757912-6757922 chr9:6757938-6757947 chr9:6757998-6758008 chr9:6757912-6757927 chr9:6757940-6757949 chr9:6757942-6757951
36	POLR2A	chr9:6757008-6758285	ProgFib	skin:	n/a	n/a
37	TBP	chr9:6756857-6758182	Hela-S3	cervix:	n/a	n/a
38	HCFC1	chr9:6756581-6759509	Hela-S3	cervix:	n/a	n/a
39	USF1	chr9:6757509-6758211	H1-hESC	embryonic stem cell:	n/a	chr9:6757939-6757948 chr9:6757941-6757950 chr9:6757938-6757951 chr9:6757940-6757949 chr9:6757940-6757949
40	POLR2A	chr9:6756351-6759085	HepG2	liver:	n/a	n/a
41	POLR2A	chr9:6756976-6758436	K562	blood:	n/a	n/a
42	POLR2A	chr9:6756863-6758234	HepG2	liver:	n/a	n/a
43	TAF1	chr9:6757078-6758706	ECC-1	luminal epithelium:	n/a	n/a
44	HA-E2F1	chr9:6757138-6758322	MCF-7	breast:	n/a	chr9:6757952-6757966 chr9:6757984-6757998 chr9:6758070-6758079
45	POLR2A	chr9:6756855-6758198	K562	blood:	n/a	n/a
46	YY1	chr9:6757394-6757935	A549	lung:	n/a	n/a
47	TAL1	chr9:6756922-6758155	K562	blood:	n/a	n/a
48	FOSL2	chr9:6756892-6758350	A549	lung:	n/a	chr9:6757913-6757922 chr9:6757365-6757375 chr9:6757366-6757374
49	YY1	chr9:6757146-6758106	GM12878	blood:	n/a	n/a
50	MAX	chr9:6756979-6758188	MCF-7	breast:	n/a	chr9:6757940-6757949 chr9:6757908-6757917 chr9:6757940-6757949 chr9:6757938-6757951 chr9:6757907-6757918 chr9:6757940-6757949

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:6757912-6757962	NB4	blood:	n/a
2	chr9:6757912-6757962	SK-N-SH	brain:	n/a
3	chr9:6757912-6757962	HL-60	blood:	n/a
4	chr9:6757912-6757962	AG04450	lung:	fetal
5	chr9:6757912-6757962	AG09309	skin:	n/a
6	chr9:6757912-6757962	H1-hESC	embryonic stem cell:	embryo
7	chr9:6757912-6757962	HEEpiC	esophagus:	n/a
8	chr9:6757912-6757962	A549	lung:	n/a
9	chr9:6757912-6757962	GM12892	blood:	n/a
10	chr9:6757912-6757962	HRE	kidney:	n/a
11	chr9:6757912-6757962	NHBE	bronchial:	n/a
12	chr9:6757912-6757962	NH-A	brain:	n/a
13	chr9:6757912-6757962	HMEC	breast:	n/a
14	chr9:6757912-6757962	HRPEpiC	eye:	n/a
15	chr9:6757912-6757962	CMK	blood:	n/a
16	chr9:6757912-6757962	GM19239	blood:	n/a
17	chr9:6757912-6757962	SK-N-MC	brain:	n/a
18	chr9:6757912-6757962	AoSMC	blood vessel:	n/a
19	chr9:6757912-6757962	ProgFib	skin:	n/a
20	chr9:6757912-6757962	HCPEpiC	choroid plexus:	n/a
21	chr9:6757912-6757962	HPAEpiC	pulmonary alveolar:	n/a
22	chr9:6757912-6757962	HUVEC	blood vessel:	n/a
23	chr9:6757912-6757962	LNCaP	prostate:	n/a
24	chr9:6757912-6757962	HEK293	kidney:	embryo
25	chr9:6757912-6757962	HCF	heart:	n/a
26	chr9:6757912-6757962	AG04449	skin:	fetal
27	chr9:6757912-6757962	HIPEpiC	eye:	n/a
28	chr9:6757912-6757962	Jurkat	blood:	n/a
29	chr9:6757912-6757962	IMR90	lung:	fetal
30	chr9:6757912-6757962	BE2_C	brain:	n/a
31	chr9:6757912-6757962	NT2-D1	testis:	n/a
32	chr9:6757912-6757962	HRCEpiC	kidney:	n/a
33	chr9:6757912-6757962	ovcar-3	ovarian:	n/a
34	chr9:6757912-6757962	AG10803	skin:	n/a
35	chr9:6757912-6757962	HCM	heart:	n/a
36	chr9:6757912-6757962	T-47D	breast:	n/a
37	chr9:6757912-6757962	SK-N-SH_RA	brain:	n/a
38	chr9:6757912-6757962	PrEC	prostate:	n/a
39	chr9:6757912-6757962	HCT-116	colon:	n/a
40	chr9:6757912-6757962	Hepatocyte	liver:	n/a
41	chr9:6757912-6757962	AG09319	gingival:	n/a
42	chr9:6757912-6757962	NHDF-neo	bronchial:	n/a
43	chr9:6757912-6757962	K562	blood:	n/a
44	chr9:6757912-6757962	U87	brain:	n/a
45	chr9:6757912-6757962	HepG2	liver:	n/a
46	chr9:6757912-6757962	PFSK-1	brain:	n/a
47	chr9:6757912-6757962	ECC-1	luminal epithelium:	n/a
48	chr9:6757912-6757962	Hela-S3	cervix:	n/a
49	chr9:6757912-6757962	MCF-7	breast:	n/a
50	chr9:6757912-6757962	SAEC	small airway:	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:78469866..78470559-chr9:6757407..6758029,2	NB4	blood:
2	chr11:88070952..88071704-chr9:6757255..6758140,2	NB4	blood:
3	chr9:6711589..6718151-chr9:6755774..6759657,12	MCF-7	breast:
4	chr9:6413251..6414875-chr9:6756450..6759044,2	K562	blood:
5	chr9:6747740..6749345-chr9:6756036..6758918,2	MCF-7	breast:
6	chr12:49245554..49246083-chr9:6757387..6757976,2	Hela-S3	cervix:
7	chr7:86781908..86782653-chr9:6757524..6758733,3	Hela-S3	cervix:
8	chr9:6702391..6705446-chr9:6756717..6760058,5	MCF-7	breast:
9	chr9:6714844..6717578-chr9:6754943..6759087,4	MCF-7	breast:
10	chr1:201979647..201980421-chr9:6757390..6758317,2	HCT-116	colon:
11	chr6:26216402..26217347-chr9:6757097..6757962,2	Hela-S3	cervix:
12	chr17:45727006..45727831-chr9:6757854..6758764,2	HCT-116	colon:

Variant related genes	Relation type
KDM4C	TF binding region
KDM4C	CpG island
ENSG00000168274	Chromatin interaction
ENSG00000162616	Chromatin interaction
ENSG00000174243	Chromatin interaction
ENSG00000135164	Chromatin interaction
ENSG00000225489	Chromatin interaction
ENSG00000273338	Chromatin interaction
ENSG00000229611	Chromatin interaction
ENSG00000256968	Chromatin interaction
ENSG00000147854	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000109861	Chromatin interaction
ENSG00000163435	Chromatin interaction
ENSG00000108424	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56296367	0.84[AFR][1000 genomes]
rs73639357	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892162	chr9:6480005-6788085	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv2752308	chr9:6523060-6899149	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
3	nsv1028402	chr9:6542253-6874231	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
4	nsv1018308	chr9:6544766-6869653	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
5	nsv1015462	chr9:6544766-6874231	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
6	nsv870402	chr9:6565246-7016784	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
7	nsv1033539	chr9:6566610-7022554	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
8	nsv466111	chr9:6567841-7017391	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
9	nsv613208	chr9:6567841-7017391	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
10	nsv1029929	chr9:6573752-6852349	Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
11	nsv539969	chr9:6573752-6852349	Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
12	nsv1024831	chr9:6573752-7018641	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
13	esv2758626	chr9:6576991-6838660	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
14	esv2759661	chr9:6576991-6845561	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
15	nsv1031417	chr9:6584138-6823129	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
16	nsv539970	chr9:6584138-6823129	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
17	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
18	nsv1021933	chr9:6605417-6824468	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
19	nsv1018845	chr9:6609578-6829592	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
20	nsv1021304	chr9:6630626-6767080	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
21	nsv1033323	chr9:6630626-6824468	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
22	nsv892173	chr9:6669474-6760919	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
23	nsv466112	chr9:6669474-6786734	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
24	nsv613212	chr9:6669474-6786734	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
25	esv2752309	chr9:6670448-6908200	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
26	nsv892176	chr9:6672097-6760919	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
27	nsv982630	chr9:6672217-6796787	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
28	nsv892181	chr9:6680477-7070962	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
29	nsv870332	chr9:6694842-6911550	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
30	nsv1021016	chr9:6701133-6770362	Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
31	nsv1016109	chr9:6712314-6924843	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
32	esv2761485	chr9:6715049-6775119	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
33	nsv613252	chr9:6715730-7022554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
34	nsv1031757	chr9:6722102-6775107	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
35	nsv831499	chr9:6723287-6930933	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
36	nsv1018557	chr9:6723728-6891136	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
37	nsv1017204	chr9:6731786-6775107	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
38	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
39	nsv892182	chr9:6739489-6811507	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
40	esv2757308	chr9:6743440-6845561	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
41	nsv1032676	chr9:6745551-6864365	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
42	nsv466115	chr9:6750556-6859189	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
43	nsv613256	chr9:6750556-6859189	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6756000-6760000	Active TSS	K562	blood
2	chr9:6756600-6758000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:6756600-6758600	Active TSS	Stomach Smooth Muscle	stomach
4	chr9:6756600-6759000	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr9:6756600-6759400	Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr9:6756600-6759400	Active TSS	Thymus	Thymus
7	chr9:6756600-6759600	Active TSS	A549	lung
8	chr9:6756600-6759600	Active TSS	NHDF-Ad	bronchial
9	chr9:6756600-6759800	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr9:6756600-6759800	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr9:6756600-6759800	Active TSS	NHLF	lung
12	chr9:6756600-6760000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:6756600-6760000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:6756600-6760000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:6756600-6760000	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr9:6756600-6760200	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr9:6756600-6760400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:6756800-6758000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:6756800-6758800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:6756800-6758800	Active TSS	Fetal Muscle Trunk	muscle
21	chr9:6756800-6759200	Active TSS	Colon Smooth Muscle	Colon
22	chr9:6756800-6759200	Active TSS	Right Ventricle	heart
23	chr9:6756800-6759400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
24	chr9:6756800-6759400	Active TSS	Brain Angular Gyrus	brain
25	chr9:6756800-6759400	Active TSS	Placenta Amnion	Placenta Amnion
26	chr9:6756800-6759600	Active TSS	H9 Cell Line	embryonic stem cell
27	chr9:6756800-6759600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:6756800-6759600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr9:6756800-6759600	Active TSS	Aorta	Aorta
30	chr9:6756800-6759600	Active TSS	Fetal Kidney	kidney
31	chr9:6756800-6759600	Active TSS	Left Ventricle	heart
32	chr9:6756800-6759600	Active TSS	Right Atrium	heart
33	chr9:6756800-6759600	Active TSS	Sigmoid Colon	Sigmoid Colon
34	chr9:6756800-6759600	Active TSS	Small Intestine	intestine
35	chr9:6756800-6759800	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr9:6756800-6759800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:6756800-6759800	Active TSS	Brain Hippocampus Middle	brain
38	chr9:6756800-6759800	Active TSS	Colonic Mucosa	Colon
39	chr9:6756800-6759800	Active TSS	Psoas Muscle	Psoas
40	chr9:6756800-6759800	Active TSS	Rectal Smooth Muscle	rectum
41	chr9:6756800-6759800	Active TSS	HSMM	muscle
42	chr9:6756800-6759800	Active TSS	HSMMtube	muscle
43	chr9:6756800-6760000	Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr9:6756800-6760000	Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr9:6756800-6760000	Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr9:6756800-6760200	Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr9:6756800-6760200	Active TSS	GM12878-XiMat	blood
48	chr9:6757000-6758200	Active TSS	Fetal Brain Female	brain
49	chr9:6757000-6758600	Active TSS	Primary T cells fromperipheralblood	blood
50	chr9:6757000-6758600	Active TSS	Primary T helper cells fromperipheralblood	blood

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