Variant report

Variant	rs576305816
Chromosome Location	chr10:6018093-6018094
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5853517..5856397-chr10:6017987..6020051,2	MCF-7	breast:
2	chr10:6018064..6021783-chr10:6129304..6132316,4	K562	blood:
3	chr10:5987354..5989797-chr10:6018047..6020538,2	MCF-7	breast:
4	chr10:6003571..6011080-chr10:6014794..6021269,11	K562	blood:
5	chr10:6018064..6019912-chr10:6129955..6132156,2	K562	blood:
6	chr10:5929157..5931311-chr10:6018059..6019673,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272764	Chromatin interaction
ENSG00000134461	Chromatin interaction
ENSG00000232807	Chromatin interaction
ENSG00000134470	Chromatin interaction
ENSG00000134453	Chromatin interaction
ENSG00000057608	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv894810	chr10:6015595-6023466	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv894811	chr10:6016399-6022562	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv894812	chr10:6016892-6022562	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5986200-6018600	Weak transcription	Aorta	Aorta
2	chr10:6005800-6018200	Weak transcription	Ovary	ovary
3	chr10:6007600-6018200	Weak transcription	Right Ventricle	heart
4	chr10:6014200-6018200	Weak transcription	Gastric	stomach
5	chr10:6017200-6018200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr10:6017400-6018200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:6017400-6018200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:6017400-6018400	Flanking Active TSS	Duodenum Mucosa	Duodenum
9	chr10:6017400-6018800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
10	chr10:6017400-6019200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:6017600-6018200	Enhancers	Primary B cells from cord blood	blood
12	chr10:6017600-6018200	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr10:6017600-6018200	Enhancers	Spleen	Spleen
14	chr10:6017600-6018400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr10:6017600-6018600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr10:6017600-6018800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr10:6017600-6020800	Active TSS	Colonic Mucosa	Colon
18	chr10:6017800-6018200	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr10:6017800-6018200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
20	chr10:6017800-6018200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:6017800-6018200	Flanking Active TSS	Liver	Liver
22	chr10:6017800-6018200	Enhancers	Fetal Thymus	thymus
23	chr10:6017800-6018200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
24	chr10:6017800-6018200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr10:6017800-6018200	Flanking Active TSS	K562	blood
26	chr10:6017800-6018400	Enhancers	Placenta	Placenta
27	chr10:6017800-6018600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr10:6017800-6018800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:6017800-6018800	Flanking Active TSS	Primary B cells from peripheral blood	blood
30	chr10:6017800-6018800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:6017800-6018800	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr10:6017800-6018800	Flanking Active TSS	HUVEC	blood vessel
33	chr10:6017800-6019200	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr10:6017800-6020200	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr10:6017800-6020400	Active TSS	Brain Anterior Caudate	brain
36	chr10:6017800-6020400	Active TSS	NHDF-Ad	bronchial
37	chr10:6017800-6020800	Active TSS	Lung	lung
38	chr10:6017800-6020800	Active TSS	Rectal Smooth Muscle	rectum
39	chr10:6017800-6021000	Active TSS	Right Atrium	heart
40	chr10:6018000-6018200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
41	chr10:6018000-6018200	Active TSS	Primary T cells from cord blood	blood
42	chr10:6018000-6018200	Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr10:6018000-6018200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:6018000-6018200	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr10:6018000-6018200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr10:6018000-6018200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:6018000-6018200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:6018000-6018200	Flanking Active TSS	Esophagus	oesophagus
49	chr10:6018000-6018200	Enhancers	Fetal Intestine Large	intestine
50	chr10:6018000-6018200	Weak transcription	Fetal Intestine Small	intestine

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