Variant report

Variant	rs57636813
Chromosome Location	chr3:46044947-46044948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46038061..46039576-chr3:46044215..46045732,2	K562	blood:
2	chr3:46044700..46047149-chr3:46047918..46051696,3	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10049103	0.84[AMR][1000 genomes]
rs1078355	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12107160	0.84[AMR][1000 genomes]
rs13060287	0.86[AFR][1000 genomes]
rs13074382	0.85[AFR][1000 genomes]
rs13081213	0.86[AFR][1000 genomes]
rs13082697	0.86[AFR][1000 genomes]
rs13089855	0.89[AFR][1000 genomes]
rs13090194	0.88[AFR][1000 genomes]
rs13097556	0.88[AFR][1000 genomes]
rs1873615	0.84[AMR][1000 genomes]
rs2036294	0.84[AMR][1000 genomes]
rs2036296	0.84[AMR][1000 genomes]
rs2088690	0.86[AFR][1000 genomes]
rs2088691	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2088692	0.86[AFR][1000 genomes]
rs2102055	0.84[AFR][1000 genomes]
rs2102056	0.83[AFR][1000 genomes]
rs2230322	0.88[AFR][1000 genomes]
rs28393246	0.84[AMR][1000 genomes]
rs34168660	0.88[AFR][1000 genomes]
rs34493660	0.95[AFR][1000 genomes]
rs34584867	0.86[AFR][1000 genomes]
rs34774687	0.86[AFR][1000 genomes]
rs35159820	0.83[AFR][1000 genomes]
rs35454877	0.87[AFR][1000 genomes]
rs35669129	0.88[AFR][1000 genomes]
rs35814488	0.86[AFR][1000 genomes]
rs35921206	0.88[AFR][1000 genomes]
rs35930050	0.88[AFR][1000 genomes]
rs36040135	0.88[AFR][1000 genomes]
rs4362758	0.88[AFR][1000 genomes]
rs55743140	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs55875328	0.89[AFR][1000 genomes]
rs56071453	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56738797	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs57228214	0.83[AFR][1000 genomes]
rs57768435	0.84[AMR][1000 genomes]
rs57800045	0.84[AMR][1000 genomes]
rs58139750	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs58969771	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs59676542	0.92[AFR][1000 genomes]
rs59754516	0.84[AMR][1000 genomes]
rs60019065	0.81[AFR][1000 genomes]
rs60080146	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs61201782	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs61276379	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs61556067	0.89[AFR][1000 genomes]
rs61598729	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs61650989	0.92[AFR][1000 genomes]
rs67200151	0.89[AFR][1000 genomes]
rs6780028	0.86[AFR][1000 genomes]
rs6788758	0.84[AMR][1000 genomes]
rs6790866	0.85[AFR][1000 genomes]
rs6791016	0.86[AFR][1000 genomes]
rs67937868	0.89[AFR][1000 genomes]
rs68087193	0.86[AFR][1000 genomes]
rs72885402	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72887108	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72887131	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72889737	0.84[AMR][1000 genomes]
rs72889759	0.84[AMR][1000 genomes]
rs72891712	0.84[AFR][1000 genomes]
rs72899100	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73830713	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73833519	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs876668	0.88[AFR][1000 genomes]
rs9852295	0.84[AMR][1000 genomes]
rs9859291	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46037600-46053000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:46037600-46064600	Weak transcription	Gastric	stomach
3	chr3:46038200-46047400	Weak transcription	Psoas Muscle	Psoas
4	chr3:46043200-46047600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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