Variant report

Variant	rs13089855
Chromosome Location	chr3:46052263-46052264
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46035848..46038695-chr3:46046466..46052317,5	K562	blood:
2	chr3:46034481..46038695-chr3:46049566..46055289,5	K562	blood:

Variant related genes	Relation type
ENSG00000163820	Chromatin interaction

Extended variants
information (count: 189 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:184)

rs_ID	r²[population]
rs1078355	0.90[AFR][1000 genomes]
rs12108042	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13059238	0.85[EUR][1000 genomes]
rs13060287	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13063527	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13066062	0.90[EUR][1000 genomes]
rs13066516	0.85[EUR][1000 genomes]
rs13068410	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13068570	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13069079	0.88[EUR][1000 genomes]
rs13069742	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13071283	0.89[EUR][1000 genomes]
rs13072267	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13074382	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075528	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13075758	0.92[EUR][1000 genomes]
rs13078739	0.89[EUR][1000 genomes]
rs13079869	0.90[EUR][1000 genomes]
rs13081151	0.97[EUR][1000 genomes]
rs13081213	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082697	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089554	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13090194	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13091868	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13093179	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13094262	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13095602	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13095717	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13096741	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13097556	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098366	0.82[ASN][1000 genomes]
rs13099120	0.85[EUR][1000 genomes]
rs13433997	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1491950	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1491951	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17214952	0.89[EUR][1000 genomes]
rs17215008	0.90[EUR][1000 genomes]
rs17215981	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17280623	0.89[EUR][1000 genomes]
rs17330872	0.93[EUR][1000 genomes]
rs17714101	0.82[EUR][1000 genomes]
rs17714228	0.82[EUR][1000 genomes]
rs17764980	0.82[EUR][1000 genomes]
rs1994491	0.83[EUR][1000 genomes]
rs1994492	0.84[EUR][1000 genomes]
rs1994493	0.84[EUR][1000 genomes]
rs2088690	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088691	0.83[AFR][1000 genomes]
rs2088692	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088693	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2102055	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2102056	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171531	0.86[EUR][1000 genomes]
rs2230322	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373087	0.85[EUR][1000 genomes]
rs33910087	0.90[EUR][1000 genomes]
rs34000569	0.88[EUR][1000 genomes]
rs34047915	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34068335	0.84[EUR][1000 genomes]
rs34093271	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34127208	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34168660	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34283240	0.98[EUR][1000 genomes]
rs34324101	0.88[EUR][1000 genomes]
rs34339943	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34340587	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34381952	0.87[EUR][1000 genomes]
rs34438204	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34442130	0.92[EUR][1000 genomes]
rs34452002	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34460587	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34492478	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34493660	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34562820	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34584867	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34619093	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34679077	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34718164	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34754340	0.98[EUR][1000 genomes]
rs34766614	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34774687	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34805664	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34836513	0.98[EUR][1000 genomes]
rs34849862	0.88[EUR][1000 genomes]
rs34863575	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34867672	0.90[EUR][1000 genomes]
rs34924300	0.88[EUR][1000 genomes]
rs35028116	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35110864	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35159820	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35161099	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35209528	0.88[EUR][1000 genomes]
rs35334665	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35454877	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35464221	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35477280	0.85[EUR][1000 genomes]
rs35501575	0.88[EUR][1000 genomes]
rs35516580	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35525815	0.89[EUR][1000 genomes]
rs35539222	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35669129	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35751180	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35772789	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35814488	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35827997	0.87[EUR][1000 genomes]
rs35831747	0.85[EUR][1000 genomes]
rs35855315	0.89[EUR][1000 genomes]
rs35883205	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35921206	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35930050	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35951367	0.82[ASN][1000 genomes]
rs36023124	0.98[EUR][1000 genomes]
rs36039366	0.87[EUR][1000 genomes]
rs36040135	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36057789	0.91[EUR][1000 genomes]
rs36122610	0.92[EUR][1000 genomes]
rs3851346	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41289616	0.87[EUR][1000 genomes]
rs41289622	0.90[EUR][1000 genomes]
rs4339140	0.91[ASN][1000 genomes]
rs4362758	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4373103	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4388012	0.87[EUR][1000 genomes]
rs4683166	0.90[EUR][1000 genomes]
rs55743140	0.89[AFR][1000 genomes]
rs55875328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55920693	0.85[EUR][1000 genomes]
rs56071453	0.82[AFR][1000 genomes]
rs56332428	0.87[EUR][1000 genomes]
rs56738797	0.84[AFR][1000 genomes]
rs57636813	0.89[AFR][1000 genomes]
rs58139750	0.89[AFR][1000 genomes]
rs58969771	0.89[AFR][1000 genomes]
rs59676542	0.81[AFR][1000 genomes]
rs60019065	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60080146	0.89[AFR][1000 genomes]
rs61201782	0.88[AFR][1000 genomes]
rs61276379	0.87[AFR][1000 genomes]
rs61556067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61598729	0.89[AFR][1000 genomes]
rs61650989	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67200151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780028	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785091	0.87[EUR][1000 genomes]
rs6790866	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791016	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67937868	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68087193	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71325092	0.82[EUR][1000 genomes]
rs71325095	0.87[EUR][1000 genomes]
rs71325096	0.88[EUR][1000 genomes]
rs71325098	0.90[EUR][1000 genomes]
rs71325100	0.90[EUR][1000 genomes]
rs71325101	0.87[EUR][1000 genomes]
rs71325102	0.89[EUR][1000 genomes]
rs71327003	0.98[EUR][1000 genomes]
rs71327006	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327007	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327009	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71327010	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327014	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71327015	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71327017	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71327021	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71327023	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71327024	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71327025	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71615438	0.98[EUR][1000 genomes]
rs72885402	0.90[AFR][1000 genomes]
rs72887108	0.90[AFR][1000 genomes]
rs72887131	0.88[AFR][1000 genomes]
rs72899100	0.87[AFR][1000 genomes]
rs73830713	0.84[AFR][1000 genomes]
rs73833519	0.85[AFR][1000 genomes]
rs7642229	0.88[EUR][1000 genomes]
rs7642320	0.90[EUR][1000 genomes]
rs7652478	0.90[EUR][1000 genomes]
rs876668	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824651	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9825081	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9838450	0.82[ASN][1000 genomes]
rs9845382	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9845542	0.82[ASN][1000 genomes]
rs9877748	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46037600-46053000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:46037600-46064600	Weak transcription	Gastric	stomach
3	chr3:46048600-46053000	Weak transcription	HMEC	breast
4	chr3:46050000-46052600	Weak transcription	Ovary	ovary
5	chr3:46051800-46052800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:46052200-46052600	Enhancers	GM12878-XiMat	blood

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