Variant report

Variant	rs35831747
Chromosome Location	chr3:45970391-45970392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:45970362..45970959-chr3:46120109..46120778,2	MCF-7	breast:
2	chr3:45829160..45831402-chr3:45969746..45971522,2	K562	blood:
3	chr3:45970248..45970774-chr3:46120086..46120929,2	K562	blood:
4	chr3:45969350..45971618-chr3:45977990..45979825,2	MCF-7	breast:
5	chr3:45802267..45803322-chr3:45970211..45971183,11	K562	blood:
6	chr3:45881689..45884570-chr3:45968593..45971542,2	MCF-7	breast:
7	chr3:45965599..45968442-chr3:45968731..45971652,2	K562	blood:
8	chr3:45552692..45553607-chr3:45970241..45970835,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000163818	Chromatin interaction

Extended variants
information (count: 149 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs13059238	0.91[EUR][1000 genomes]
rs13060287	0.83[EUR][1000 genomes]
rs13063527	0.80[EUR][1000 genomes]
rs13066062	0.96[EUR][1000 genomes]
rs13066516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13068570	0.80[EUR][1000 genomes]
rs13069079	0.97[EUR][1000 genomes]
rs13071283	0.95[EUR][1000 genomes]
rs13072267	0.80[EUR][1000 genomes]
rs13074382	0.83[EUR][1000 genomes]
rs13075528	0.80[EUR][1000 genomes]
rs13075758	0.94[EUR][1000 genomes]
rs13078739	0.95[EUR][1000 genomes]
rs13079869	0.96[EUR][1000 genomes]
rs13081151	0.84[EUR][1000 genomes]
rs13081213	0.83[EUR][1000 genomes]
rs13082697	0.83[EUR][1000 genomes]
rs13089554	0.80[EUR][1000 genomes]
rs13089855	0.85[EUR][1000 genomes]
rs13090194	0.83[EUR][1000 genomes]
rs13091868	0.80[EUR][1000 genomes]
rs13093179	0.80[EUR][1000 genomes]
rs13095602	0.80[EUR][1000 genomes]
rs13095717	0.80[EUR][1000 genomes]
rs13096741	0.80[EUR][1000 genomes]
rs13097556	0.83[EUR][1000 genomes]
rs13099120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13433997	0.84[EUR][1000 genomes]
rs1491950	0.80[EUR][1000 genomes]
rs17214952	0.95[EUR][1000 genomes]
rs17215008	0.96[EUR][1000 genomes]
rs17215981	0.80[EUR][1000 genomes]
rs17280623	0.95[EUR][1000 genomes]
rs17330872	0.92[EUR][1000 genomes]
rs17714101	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17714228	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17764831	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17764980	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1994491	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1994492	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1994493	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2088690	0.83[EUR][1000 genomes]
rs2088692	0.83[EUR][1000 genomes]
rs2102055	0.83[EUR][1000 genomes]
rs2171531	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2230322	0.83[EUR][1000 genomes]
rs2373087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs33910087	0.96[EUR][1000 genomes]
rs34000569	0.97[EUR][1000 genomes]
rs34047915	0.80[EUR][1000 genomes]
rs34068335	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34093271	0.80[EUR][1000 genomes]
rs34127208	0.80[EUR][1000 genomes]
rs34168660	0.83[EUR][1000 genomes]
rs34283240	0.87[EUR][1000 genomes]
rs34324101	0.97[EUR][1000 genomes]
rs34339943	0.84[EUR][1000 genomes]
rs34340587	0.81[EUR][1000 genomes]
rs34381952	0.96[EUR][1000 genomes]
rs34438204	0.84[EUR][1000 genomes]
rs34442130	0.94[EUR][1000 genomes]
rs34452002	0.80[EUR][1000 genomes]
rs34460587	0.80[EUR][1000 genomes]
rs34492478	0.80[EUR][1000 genomes]
rs34493660	0.85[EUR][1000 genomes]
rs34518147	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34562820	0.84[EUR][1000 genomes]
rs34584867	0.83[EUR][1000 genomes]
rs34619093	0.84[EUR][1000 genomes]
rs34679077	0.84[EUR][1000 genomes]
rs34718164	0.80[EUR][1000 genomes]
rs34754340	0.87[EUR][1000 genomes]
rs34766614	0.80[EUR][1000 genomes]
rs34774687	0.83[EUR][1000 genomes]
rs34836513	0.87[EUR][1000 genomes]
rs34849862	0.97[EUR][1000 genomes]
rs34863575	0.84[EUR][1000 genomes]
rs34901975	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35110864	0.80[EUR][1000 genomes]
rs35159820	0.83[EUR][1000 genomes]
rs35161099	0.84[EUR][1000 genomes]
rs35209528	0.97[EUR][1000 genomes]
rs35280891	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35334665	0.84[EUR][1000 genomes]
rs35454877	0.83[EUR][1000 genomes]
rs35477280	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35501575	0.97[EUR][1000 genomes]
rs35525815	0.95[EUR][1000 genomes]
rs35539222	0.80[EUR][1000 genomes]
rs35669129	0.83[EUR][1000 genomes]
rs35751180	0.84[EUR][1000 genomes]
rs35772789	0.84[EUR][1000 genomes]
rs35814488	0.83[EUR][1000 genomes]
rs35827997	0.96[EUR][1000 genomes]
rs35855315	0.95[EUR][1000 genomes]
rs35883205	0.86[EUR][1000 genomes]
rs35921206	0.83[EUR][1000 genomes]
rs35930050	0.83[EUR][1000 genomes]
rs36023124	0.87[EUR][1000 genomes]
rs36039366	0.96[EUR][1000 genomes]
rs36040135	0.83[EUR][1000 genomes]
rs36057789	0.80[EUR][1000 genomes]
rs36122610	0.94[EUR][1000 genomes]
rs3851346	0.86[EUR][1000 genomes]
rs41289616	0.96[EUR][1000 genomes]
rs41289622	0.96[EUR][1000 genomes]
rs4362758	0.83[EUR][1000 genomes]
rs4373103	0.80[EUR][1000 genomes]
rs4388012	0.96[EUR][1000 genomes]
rs55875328	0.85[EUR][1000 genomes]
rs55920693	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56332428	0.96[EUR][1000 genomes]
rs60019065	0.83[EUR][1000 genomes]
rs61556067	0.85[EUR][1000 genomes]
rs61650989	0.85[EUR][1000 genomes]
rs67200151	0.85[EUR][1000 genomes]
rs6780028	0.83[EUR][1000 genomes]
rs6782814	0.83[EUR][1000 genomes]
rs6785091	0.96[EUR][1000 genomes]
rs6790866	0.83[EUR][1000 genomes]
rs6791016	0.83[EUR][1000 genomes]
rs67937868	0.85[EUR][1000 genomes]
rs68087193	0.81[EUR][1000 genomes]
rs71325091	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71325092	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71325095	0.96[EUR][1000 genomes]
rs71325096	0.97[EUR][1000 genomes]
rs71325098	0.96[EUR][1000 genomes]
rs71325100	0.96[EUR][1000 genomes]
rs71325101	0.93[EUR][1000 genomes]
rs71325102	0.95[EUR][1000 genomes]
rs71327003	0.87[EUR][1000 genomes]
rs71327006	0.84[EUR][1000 genomes]
rs71327007	0.84[EUR][1000 genomes]
rs71327009	0.84[EUR][1000 genomes]
rs71327010	0.84[EUR][1000 genomes]
rs71327014	0.80[EUR][1000 genomes]
rs71327015	0.80[EUR][1000 genomes]
rs71327017	0.80[EUR][1000 genomes]
rs71327021	0.80[EUR][1000 genomes]
rs71327023	0.80[EUR][1000 genomes]
rs71327024	0.80[EUR][1000 genomes]
rs71327025	0.80[EUR][1000 genomes]
rs71615438	0.87[EUR][1000 genomes]
rs876668	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45957800-45971200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:45958000-45980800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:45958400-45974200	Strong transcription	Fetal Stomach	stomach
4	chr3:45958800-45980000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:45958800-45980200	Strong transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:45958800-45988000	Weak transcription	HUVEC	blood vessel
7	chr3:45959000-45973600	Weak transcription	Fetal Kidney	kidney
8	chr3:45959200-45979800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr3:45959200-45980400	Strong transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:45959400-45971800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:45959400-45973400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr3:45959400-46009800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:45959600-45973200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr3:45959800-45974600	Strong transcription	Fetal Muscle Trunk	muscle
15	chr3:45959800-45979800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:45959800-45979800	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:45959800-45980400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr3:45960000-45979400	Strong transcription	Fetal Intestine Large	intestine
19	chr3:45960000-45980400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:45960200-45974200	Strong transcription	Fetal Intestine Small	intestine
21	chr3:45960400-45980200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr3:45961600-45979400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:45961600-45979800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr3:45963200-45985200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr3:45963800-45979800	Strong transcription	Primary T cells from cord blood	blood
26	chr3:45963800-45979800	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr3:45964200-45970400	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr3:45964200-45970400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:45964400-45980400	Weak transcription	Fetal Brain Female	brain
30	chr3:45965000-45970400	Weak transcription	Fetal Heart	heart
31	chr3:45965200-45972200	Weak transcription	Brain Germinal Matrix	brain
32	chr3:45965400-45971400	Weak transcription	NHEK	skin
33	chr3:45965400-45975800	Weak transcription	Psoas Muscle	Psoas
34	chr3:45965400-45977600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr3:45965400-45980400	Weak transcription	Fetal Brain Male	brain
36	chr3:45965600-45971200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:45965800-45972000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr3:45965800-45972400	Weak transcription	HSMMtube	muscle
39	chr3:45966000-45970800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr3:45966000-45971800	Weak transcription	Hela-S3	cervix
41	chr3:45966000-45980600	Weak transcription	HMEC	breast
42	chr3:45966200-45974000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:45966800-45979600	Strong transcription	Liver	Liver
44	chr3:45967000-45976600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr3:45967000-45978200	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr3:45967200-45974600	Strong transcription	Rectal Smooth Muscle	rectum
47	chr3:45967200-45977600	Strong transcription	Primary B cells from cord blood	blood
48	chr3:45967200-45979400	Strong transcription	Adipose Nuclei	Adipose
49	chr3:45967200-45979800	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr3:45967200-45980000	Strong transcription	Fetal Muscle Leg	muscle

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