Variant report

Variant	rs13433997
Chromosome Location	chr3:46049765-46049766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46048434..46050837-chr3:46053075..46054735,2	K562	blood:
2	chr3:46035848..46038695-chr3:46046466..46052317,5	K562	blood:
3	chr3:46049509..46051650-chr3:46061569..46063331,2	K562	blood:
4	chr3:46034481..46038695-chr3:46049566..46055289,5	K562	blood:
5	chr3:46044700..46047149-chr3:46047918..46051696,3	K562	blood:

Variant related genes	Relation type
ENSG00000163820	Chromatin interaction

Extended variants
information (count: 165 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs12108042	0.86[EUR][1000 genomes]
rs13059238	0.86[EUR][1000 genomes]
rs13060287	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13063527	0.87[EUR][1000 genomes]
rs13066062	0.88[EUR][1000 genomes]
rs13066516	0.84[EUR][1000 genomes]
rs13068410	0.86[EUR][1000 genomes]
rs13068570	0.87[EUR][1000 genomes]
rs13069079	0.87[EUR][1000 genomes]
rs13069742	0.88[EUR][1000 genomes]
rs13071283	0.89[EUR][1000 genomes]
rs13072267	0.87[EUR][1000 genomes]
rs13074382	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13075528	0.87[EUR][1000 genomes]
rs13075758	0.90[EUR][1000 genomes]
rs13078739	0.89[EUR][1000 genomes]
rs13079869	0.88[EUR][1000 genomes]
rs13081151	0.93[EUR][1000 genomes]
rs13081213	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13082697	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13089554	0.87[EUR][1000 genomes]
rs13089855	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13090194	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13091868	0.87[EUR][1000 genomes]
rs13093179	0.87[EUR][1000 genomes]
rs13094262	0.86[EUR][1000 genomes]
rs13095602	0.87[EUR][1000 genomes]
rs13095717	0.87[EUR][1000 genomes]
rs13096741	0.89[EUR][1000 genomes]
rs13097556	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13099120	0.84[EUR][1000 genomes]
rs1491950	0.87[EUR][1000 genomes]
rs1491951	0.88[EUR][1000 genomes]
rs17214952	0.89[EUR][1000 genomes]
rs17215008	0.88[EUR][1000 genomes]
rs17215981	0.87[EUR][1000 genomes]
rs17280623	0.89[EUR][1000 genomes]
rs17330872	0.91[EUR][1000 genomes]
rs17714101	0.81[EUR][1000 genomes]
rs17714228	0.81[EUR][1000 genomes]
rs17764980	0.81[EUR][1000 genomes]
rs1994491	0.84[EUR][1000 genomes]
rs1994492	0.83[EUR][1000 genomes]
rs1994493	0.83[EUR][1000 genomes]
rs2088690	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2088692	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2088693	0.86[EUR][1000 genomes]
rs2102055	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2102056	0.89[EUR][1000 genomes]
rs2171531	0.85[EUR][1000 genomes]
rs2230322	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2373087	0.84[EUR][1000 genomes]
rs33910087	0.88[EUR][1000 genomes]
rs34000569	0.87[EUR][1000 genomes]
rs34047915	0.87[EUR][1000 genomes]
rs34068335	0.83[EUR][1000 genomes]
rs34093271	0.87[EUR][1000 genomes]
rs34127208	0.87[EUR][1000 genomes]
rs34168660	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34283240	0.96[EUR][1000 genomes]
rs34324101	0.87[EUR][1000 genomes]
rs34339943	0.93[EUR][1000 genomes]
rs34340587	0.90[EUR][1000 genomes]
rs34381952	0.88[EUR][1000 genomes]
rs34438204	0.93[EUR][1000 genomes]
rs34442130	0.90[EUR][1000 genomes]
rs34452002	0.87[EUR][1000 genomes]
rs34460587	0.87[EUR][1000 genomes]
rs34492478	0.87[EUR][1000 genomes]
rs34493660	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34562820	0.93[EUR][1000 genomes]
rs34584867	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34619093	0.93[EUR][1000 genomes]
rs34679077	0.93[EUR][1000 genomes]
rs34718164	0.89[EUR][1000 genomes]
rs34754340	0.96[EUR][1000 genomes]
rs34766614	0.87[EUR][1000 genomes]
rs34774687	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34805664	0.83[EUR][1000 genomes]
rs34836513	0.96[EUR][1000 genomes]
rs34849862	0.87[EUR][1000 genomes]
rs34863575	0.93[EUR][1000 genomes]
rs34867672	0.86[EUR][1000 genomes]
rs34924300	0.84[EUR][1000 genomes]
rs35028116	0.86[EUR][1000 genomes]
rs35110864	0.87[EUR][1000 genomes]
rs35159820	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35161099	0.93[EUR][1000 genomes]
rs35209528	0.87[EUR][1000 genomes]
rs35334665	0.93[EUR][1000 genomes]
rs35454877	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35464221	0.81[EUR][1000 genomes]
rs35477280	0.84[EUR][1000 genomes]
rs35501575	0.87[EUR][1000 genomes]
rs35516580	0.85[EUR][1000 genomes]
rs35525815	0.89[EUR][1000 genomes]
rs35539222	0.87[EUR][1000 genomes]
rs35669129	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35751180	0.93[EUR][1000 genomes]
rs35772789	0.93[EUR][1000 genomes]
rs35814488	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35827997	0.88[EUR][1000 genomes]
rs35831747	0.84[EUR][1000 genomes]
rs35855315	0.89[EUR][1000 genomes]
rs35883205	0.95[EUR][1000 genomes]
rs35921206	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35930050	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36023124	0.96[EUR][1000 genomes]
rs36039366	0.88[EUR][1000 genomes]
rs36040135	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36057789	0.87[EUR][1000 genomes]
rs36122610	0.90[EUR][1000 genomes]
rs3851346	0.95[EUR][1000 genomes]
rs41289616	0.88[EUR][1000 genomes]
rs41289622	0.88[EUR][1000 genomes]
rs4362758	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4373103	0.87[EUR][1000 genomes]
rs4388012	0.88[EUR][1000 genomes]
rs4683166	0.86[EUR][1000 genomes]
rs55875328	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55920693	0.84[EUR][1000 genomes]
rs56332428	0.88[EUR][1000 genomes]
rs60019065	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61556067	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61650989	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67200151	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6780028	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6785091	0.88[EUR][1000 genomes]
rs6790866	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6791016	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67937868	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68087193	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71325092	0.81[EUR][1000 genomes]
rs71325095	0.88[EUR][1000 genomes]
rs71325096	0.87[EUR][1000 genomes]
rs71325098	0.88[EUR][1000 genomes]
rs71325100	0.88[EUR][1000 genomes]
rs71325101	0.87[EUR][1000 genomes]
rs71325102	0.89[EUR][1000 genomes]
rs71327003	0.96[EUR][1000 genomes]
rs71327006	0.93[EUR][1000 genomes]
rs71327007	0.93[EUR][1000 genomes]
rs71327009	0.93[EUR][1000 genomes]
rs71327010	0.93[EUR][1000 genomes]
rs71327014	0.87[EUR][1000 genomes]
rs71327015	0.87[EUR][1000 genomes]
rs71327017	0.87[EUR][1000 genomes]
rs71327021	0.87[EUR][1000 genomes]
rs71327023	0.87[EUR][1000 genomes]
rs71327024	0.87[EUR][1000 genomes]
rs71327025	0.87[EUR][1000 genomes]
rs71615438	0.96[EUR][1000 genomes]
rs7642229	0.84[EUR][1000 genomes]
rs7642320	0.86[EUR][1000 genomes]
rs7652478	0.86[EUR][1000 genomes]
rs876668	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9824651	0.88[EUR][1000 genomes]
rs9825081	0.88[EUR][1000 genomes]
rs9845382	0.88[EUR][1000 genomes]
rs9877748	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46037600-46053000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:46037600-46064600	Weak transcription	Gastric	stomach
3	chr3:46046200-46050000	Enhancers	Ovary	ovary
4	chr3:46048600-46053000	Weak transcription	HMEC	breast
5	chr3:46049200-46049800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:46049200-46050000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr3:46049600-46049800	Enhancers	Psoas Muscle	Psoas
8	chr3:46049600-46049800	Enhancers	Spleen	Spleen
9	chr3:46049600-46050000	Enhancers	Skeletal Muscle Male	skeletal muscle

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