Variant report

Variant	rs13068410
Chromosome Location	chr3:46080176-46080177
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46064588..46066447-chr3:46080025..46081697,2	K562	blood:

Variant related genes	Relation type
ENSG00000226933	Chromatin interaction

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs12108042	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13060287	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13063527	0.82[EUR][1000 genomes]
rs13066062	0.81[EUR][1000 genomes]
rs13068570	0.82[EUR][1000 genomes]
rs13069742	0.82[EUR][1000 genomes]
rs13072267	0.82[EUR][1000 genomes]
rs13074382	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13075528	0.82[EUR][1000 genomes]
rs13075758	0.82[EUR][1000 genomes]
rs13079869	0.81[EUR][1000 genomes]
rs13081151	0.87[EUR][1000 genomes]
rs13081213	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13082697	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13089554	0.82[EUR][1000 genomes]
rs13089855	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13090194	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13091868	0.82[EUR][1000 genomes]
rs13093179	0.82[EUR][1000 genomes]
rs13094262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095602	0.82[EUR][1000 genomes]
rs13095717	0.82[EUR][1000 genomes]
rs13096741	0.83[EUR][1000 genomes]
rs13097556	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13433997	0.86[EUR][1000 genomes]
rs1491950	0.82[EUR][1000 genomes]
rs1491951	0.82[EUR][1000 genomes]
rs17215008	0.81[EUR][1000 genomes]
rs17215981	0.82[EUR][1000 genomes]
rs17330872	0.83[EUR][1000 genomes]
rs2088690	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2088692	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2088693	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2102055	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2102056	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2230322	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs33910087	0.81[EUR][1000 genomes]
rs34047915	0.82[EUR][1000 genomes]
rs34093271	0.82[EUR][1000 genomes]
rs34127208	0.82[EUR][1000 genomes]
rs34168660	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34283240	0.88[EUR][1000 genomes]
rs34339943	0.87[EUR][1000 genomes]
rs34340587	0.84[EUR][1000 genomes]
rs34438204	0.87[EUR][1000 genomes]
rs34442130	0.82[EUR][1000 genomes]
rs34452002	0.82[EUR][1000 genomes]
rs34460587	0.82[EUR][1000 genomes]
rs34492478	0.82[EUR][1000 genomes]
rs34493660	0.90[EUR][1000 genomes]
rs34562820	0.87[EUR][1000 genomes]
rs34584867	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34619093	0.87[EUR][1000 genomes]
rs34679077	0.87[EUR][1000 genomes]
rs34718164	0.83[EUR][1000 genomes]
rs34754340	0.88[EUR][1000 genomes]
rs34766614	0.82[EUR][1000 genomes]
rs34774687	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34805664	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34836513	0.88[EUR][1000 genomes]
rs34863575	0.87[EUR][1000 genomes]
rs34867672	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34924300	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35028116	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35110864	0.82[EUR][1000 genomes]
rs35159820	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35161099	0.87[EUR][1000 genomes]
rs35334665	0.87[EUR][1000 genomes]
rs35454877	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35539222	0.82[EUR][1000 genomes]
rs35669129	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35751180	0.87[EUR][1000 genomes]
rs35772789	0.87[EUR][1000 genomes]
rs35814488	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35883205	0.89[EUR][1000 genomes]
rs35921206	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35930050	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs36023124	0.88[EUR][1000 genomes]
rs36040135	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs36057789	0.82[EUR][1000 genomes]
rs36122610	0.82[EUR][1000 genomes]
rs3851346	0.89[EUR][1000 genomes]
rs41289622	0.81[EUR][1000 genomes]
rs4362758	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4373103	0.82[EUR][1000 genomes]
rs4683166	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55875328	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs56738797	0.80[AFR][1000 genomes]
rs60019065	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61276379	0.80[AFR][1000 genomes]
rs61556067	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs61650989	0.90[EUR][1000 genomes]
rs67200151	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6780028	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6790866	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6791016	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs67937868	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs68087193	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71325098	0.81[EUR][1000 genomes]
rs71325100	0.81[EUR][1000 genomes]
rs71327003	0.88[EUR][1000 genomes]
rs71327006	0.87[EUR][1000 genomes]
rs71327007	0.87[EUR][1000 genomes]
rs71327009	0.87[EUR][1000 genomes]
rs71327010	0.87[EUR][1000 genomes]
rs71327014	0.82[EUR][1000 genomes]
rs71327015	0.82[EUR][1000 genomes]
rs71327017	0.82[EUR][1000 genomes]
rs71327021	0.82[EUR][1000 genomes]
rs71327023	0.82[EUR][1000 genomes]
rs71327024	0.82[EUR][1000 genomes]
rs71327025	0.82[EUR][1000 genomes]
rs71615438	0.88[EUR][1000 genomes]
rs72899100	0.80[AFR][1000 genomes]
rs73830713	0.80[AFR][1000 genomes]
rs7642229	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7642320	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652478	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876668	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9824651	0.82[EUR][1000 genomes]
rs9825081	0.82[EUR][1000 genomes]
rs9845382	0.82[EUR][1000 genomes]
rs9877748	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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