Variant report

Variant	rs35477280
Chromosome Location	chr3:45974092-45974093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:45973841..45976554-chr3:45977102..45979618,2	MCF-7	breast:
2	chr3:45945916..45947727-chr3:45972122..45974949,2	K562	blood:
3	chr3:45972956..45974535-chr3:45977959..45979517,2	K562	blood:

Extended variants
information (count: 152 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs13059238	0.91[EUR][1000 genomes]
rs13060287	0.83[EUR][1000 genomes]
rs13063527	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13066062	0.96[EUR][1000 genomes]
rs13066516	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13068570	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13069079	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs13071283	0.95[EUR][1000 genomes]
rs13072267	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13074382	0.83[EUR][1000 genomes]
rs13075528	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13075758	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs13078739	0.95[EUR][1000 genomes]
rs13079869	0.96[EUR][1000 genomes]
rs13081151	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13081213	0.83[EUR][1000 genomes]
rs13082697	0.83[EUR][1000 genomes]
rs13089554	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13089855	0.85[EUR][1000 genomes]
rs13090194	0.83[EUR][1000 genomes]
rs13091868	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13093179	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13095602	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13095717	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13096741	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13097556	0.83[EUR][1000 genomes]
rs13099120	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13433997	0.84[EUR][1000 genomes]
rs1491950	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17214952	0.95[EUR][1000 genomes]
rs17215008	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17215981	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17280623	0.95[EUR][1000 genomes]
rs17330872	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17714101	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17714228	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17764831	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17764980	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1994491	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1994492	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1994493	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2088690	0.83[EUR][1000 genomes]
rs2088692	0.83[EUR][1000 genomes]
rs2102055	0.83[EUR][1000 genomes]
rs2171531	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2230322	0.83[EUR][1000 genomes]
rs2373087	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs33910087	0.96[EUR][1000 genomes]
rs34000569	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs34047915	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34068335	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34093271	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34127208	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34168660	0.83[EUR][1000 genomes]
rs34283240	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34324101	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs34339943	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34340587	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34381952	0.96[EUR][1000 genomes]
rs34438204	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34442130	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs34452002	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34460587	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34492478	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34493660	0.85[EUR][1000 genomes]
rs34518147	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34562820	0.84[EUR][1000 genomes]
rs34584867	0.83[EUR][1000 genomes]
rs34619093	0.84[EUR][1000 genomes]
rs34679077	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34718164	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34754340	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34766614	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34774687	0.83[EUR][1000 genomes]
rs34836513	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34849862	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs34863575	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34901975	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35110864	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs35159820	0.83[EUR][1000 genomes]
rs35161099	0.84[EUR][1000 genomes]
rs35209528	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs35280891	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35334665	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35454877	0.83[EUR][1000 genomes]
rs35464221	1.00[AFR][1000 genomes]
rs35501575	0.97[EUR][1000 genomes]
rs35516580	1.00[AFR][1000 genomes]
rs35525815	0.95[EUR][1000 genomes]
rs35539222	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs35669129	0.83[EUR][1000 genomes]
rs35751180	0.84[EUR][1000 genomes]
rs35772789	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35814488	0.83[EUR][1000 genomes]
rs35827997	0.96[EUR][1000 genomes]
rs35831747	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35855315	0.95[EUR][1000 genomes]
rs35883205	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35921206	0.83[EUR][1000 genomes]
rs35930050	0.83[EUR][1000 genomes]
rs36023124	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs36039366	0.96[EUR][1000 genomes]
rs36040135	0.83[EUR][1000 genomes]
rs36057789	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs36122610	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs3851346	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs41289616	0.96[EUR][1000 genomes]
rs41289622	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4362758	0.83[EUR][1000 genomes]
rs4373103	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4388012	0.96[EUR][1000 genomes]
rs55875328	0.85[EUR][1000 genomes]
rs55920693	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs56332428	0.96[EUR][1000 genomes]
rs60019065	0.83[EUR][1000 genomes]
rs61556067	0.85[EUR][1000 genomes]
rs61650989	0.85[EUR][1000 genomes]
rs67200151	0.85[EUR][1000 genomes]
rs6780028	0.83[EUR][1000 genomes]
rs6782814	0.83[EUR][1000 genomes]
rs6785091	0.96[EUR][1000 genomes]
rs6790866	0.83[EUR][1000 genomes]
rs6791016	0.83[EUR][1000 genomes]
rs67937868	0.85[EUR][1000 genomes]
rs68087193	0.81[EUR][1000 genomes]
rs71325091	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs71325092	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71325095	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs71325096	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs71325098	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs71325100	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs71325101	0.93[EUR][1000 genomes]
rs71325102	0.95[EUR][1000 genomes]
rs71327003	0.87[EUR][1000 genomes]
rs71327006	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs71327007	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs71327009	0.84[EUR][1000 genomes]
rs71327010	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs71327014	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs71327015	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs71327017	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs71327021	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs71327023	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs71327024	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs71327025	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs71615437	1.00[AFR][1000 genomes]
rs71615438	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs876668	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45958000-45980800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:45958400-45974200	Strong transcription	Fetal Stomach	stomach
3	chr3:45958800-45980000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:45958800-45980200	Strong transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:45958800-45988000	Weak transcription	HUVEC	blood vessel
6	chr3:45959200-45979800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr3:45959200-45980400	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:45959400-46009800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:45959800-45974600	Strong transcription	Fetal Muscle Trunk	muscle
10	chr3:45959800-45979800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:45959800-45979800	Strong transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:45959800-45980400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:45960000-45979400	Strong transcription	Fetal Intestine Large	intestine
14	chr3:45960000-45980400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:45960200-45974200	Strong transcription	Fetal Intestine Small	intestine
16	chr3:45960400-45980200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:45961600-45979400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr3:45961600-45979800	Strong transcription	Primary B cells from peripheral blood	blood
19	chr3:45963200-45985200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr3:45963800-45979800	Strong transcription	Primary T cells from cord blood	blood
21	chr3:45963800-45979800	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr3:45964400-45980400	Weak transcription	Fetal Brain Female	brain
23	chr3:45965400-45975800	Weak transcription	Psoas Muscle	Psoas
24	chr3:45965400-45977600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:45965400-45980400	Weak transcription	Fetal Brain Male	brain
26	chr3:45966000-45980600	Weak transcription	HMEC	breast
27	chr3:45966800-45979600	Strong transcription	Liver	Liver
28	chr3:45967000-45976600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:45967000-45978200	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr3:45967200-45974600	Strong transcription	Rectal Smooth Muscle	rectum
31	chr3:45967200-45977600	Strong transcription	Primary B cells from cord blood	blood
32	chr3:45967200-45979400	Strong transcription	Adipose Nuclei	Adipose
33	chr3:45967200-45979800	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr3:45967200-45980000	Strong transcription	Fetal Muscle Leg	muscle
35	chr3:45967400-45979800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:45967800-45976200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:45968000-45979200	Strong transcription	Placenta	Placenta
38	chr3:45968400-45974600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr3:45968400-45979800	Strong transcription	Duodenum Mucosa	Duodenum
40	chr3:45968400-45979800	Strong transcription	Ovary	ovary
41	chr3:45968600-45974200	Strong transcription	Spleen	Spleen
42	chr3:45968600-45974400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
43	chr3:45968600-45978800	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr3:45968600-45979000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
45	chr3:45968600-45979800	Strong transcription	Stomach Smooth Muscle	stomach
46	chr3:45968600-45980200	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr3:45968800-45974200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr3:45968800-45976000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr3:45968800-45979200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr3:45968800-45979200	Strong transcription	HepG2	liver

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