Variant report

Variant	rs6782814
Chromosome Location	chr3:45936945-45936946
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:45932573..45935155-chr3:45936845..45938513,2	MCF-7	breast:
2	chr3:45936711..45939307-chr3:45956614..45959025,2	MCF-7	breast:
3	chr3:45928724..45930897-chr3:45935316..45937511,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163818	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13066516	0.83[EUR][1000 genomes]
rs13069079	0.80[EUR][1000 genomes]
rs13099120	0.83[EUR][1000 genomes]
rs17714101	0.88[EUR][1000 genomes]
rs17714228	0.88[EUR][1000 genomes]
rs17764831	0.83[EUR][1000 genomes]
rs17764980	0.88[EUR][1000 genomes]
rs1994491	0.83[EUR][1000 genomes]
rs1994492	0.84[EUR][1000 genomes]
rs1994493	0.84[EUR][1000 genomes]
rs2171531	0.82[EUR][1000 genomes]
rs2373087	0.83[EUR][1000 genomes]
rs34000569	0.80[EUR][1000 genomes]
rs34068335	0.84[EUR][1000 genomes]
rs34324101	0.80[EUR][1000 genomes]
rs34518147	0.83[EUR][1000 genomes]
rs34849862	0.80[EUR][1000 genomes]
rs34901975	0.81[EUR][1000 genomes]
rs35209528	0.80[EUR][1000 genomes]
rs35477280	0.83[EUR][1000 genomes]
rs35501575	0.80[EUR][1000 genomes]
rs35831747	0.83[EUR][1000 genomes]
rs55920693	0.81[EUR][1000 genomes]
rs71325091	0.84[EUR][1000 genomes]
rs71325092	0.88[EUR][1000 genomes]
rs71325096	0.80[EUR][1000 genomes]
rs7653372	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45923400-45948200	Weak transcription	Right Atrium	heart
2	chr3:45925200-45949600	Weak transcription	Pancreas	Pancrea
3	chr3:45925600-45947800	Genic enhancers	Dnd41	blood
4	chr3:45932400-45960200	Weak transcription	Fetal Intestine Small	intestine
5	chr3:45933600-45937800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:45934000-45960200	Weak transcription	Right Ventricle	heart
7	chr3:45934200-45938400	Weak transcription	Aorta	Aorta
8	chr3:45934600-45946200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:45935400-45941200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:45935400-45945000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:45936000-45937600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr3:45936000-45937600	Weak transcription	Placenta	Placenta
13	chr3:45936000-45947600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:45936200-45939400	Enhancers	Hela-S3	cervix
15	chr3:45936400-45937200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:45936400-45937400	Enhancers	NHEK	skin
17	chr3:45936400-45939200	Enhancers	HMEC	breast
18	chr3:45936600-45938000	Weak transcription	HSMM	muscle
19	chr3:45936600-45938600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:45936600-45940200	Genic enhancers	Thymus	Thymus
21	chr3:45936600-45945800	Weak transcription	Primary B cells from cord blood	blood
22	chr3:45936600-45950200	Genic enhancers	Fetal Thymus	thymus
23	chr3:45936800-45937800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:45936800-45937800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr3:45936800-45937800	Weak transcription	Fetal Stomach	stomach
26	chr3:45936800-45939600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr3:45936800-45941000	Weak transcription	Primary T cells from cord blood	blood
28	chr3:45936800-45946200	Weak transcription	Primary hematopoietic stem cells	blood

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