Variant report

Variant	rs34518147
Chromosome Location	chr3:45920298-45920299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs13066062	0.83[EUR][1000 genomes]
rs13066516	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13069079	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13071283	0.82[EUR][1000 genomes]
rs13072267	1.00[AFR][1000 genomes]
rs13075528	1.00[AFR][1000 genomes]
rs13075758	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13078739	0.82[EUR][1000 genomes]
rs13079869	0.83[EUR][1000 genomes]
rs13081151	1.00[AFR][1000 genomes]
rs13089554	1.00[AFR][1000 genomes]
rs13091868	1.00[AFR][1000 genomes]
rs13095602	1.00[AFR][1000 genomes]
rs13095717	1.00[AFR][1000 genomes]
rs13096741	1.00[AFR][1000 genomes]
rs13099120	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17214952	0.82[EUR][1000 genomes]
rs17215008	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17215981	1.00[AFR][1000 genomes]
rs17280623	0.82[EUR][1000 genomes]
rs17330872	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17714101	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17714228	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17764831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17764980	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1994491	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1994492	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1994493	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2171531	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2373087	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs33910087	0.83[EUR][1000 genomes]
rs34000569	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34047915	1.00[AFR][1000 genomes]
rs34068335	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34127208	1.00[AFR][1000 genomes]
rs34283240	1.00[AFR][1000 genomes]
rs34324101	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34339943	1.00[AFR][1000 genomes]
rs34340587	1.00[AFR][1000 genomes]
rs34381952	0.83[EUR][1000 genomes]
rs34438204	1.00[AFR][1000 genomes]
rs34442130	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34679077	1.00[AFR][1000 genomes]
rs34718164	1.00[AFR][1000 genomes]
rs34754340	1.00[AFR][1000 genomes]
rs34766614	1.00[AFR][1000 genomes]
rs34836513	1.00[AFR][1000 genomes]
rs34849862	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34863575	1.00[AFR][1000 genomes]
rs34901975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35209528	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35280891	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs35334665	1.00[AFR][1000 genomes]
rs35477280	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35501575	0.84[EUR][1000 genomes]
rs35516580	1.00[AFR][1000 genomes]
rs35525815	0.82[EUR][1000 genomes]
rs35772789	1.00[AFR][1000 genomes]
rs35827997	0.83[EUR][1000 genomes]
rs35831747	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35855315	0.82[EUR][1000 genomes]
rs35883205	1.00[AFR][1000 genomes]
rs36023124	1.00[AFR][1000 genomes]
rs36039366	0.83[EUR][1000 genomes]
rs36057789	1.00[AFR][1000 genomes]
rs36122610	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3851346	1.00[AFR][1000 genomes]
rs41289616	0.83[EUR][1000 genomes]
rs41289622	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4388012	0.83[EUR][1000 genomes]
rs55920693	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56332428	0.83[EUR][1000 genomes]
rs6782814	0.83[EUR][1000 genomes]
rs6785091	0.83[EUR][1000 genomes]
rs71325091	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71325092	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71325095	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs71325096	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs71325098	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs71325100	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs71325101	0.81[EUR][1000 genomes]
rs71325102	0.82[EUR][1000 genomes]
rs71327006	1.00[AFR][1000 genomes]
rs71327007	1.00[AFR][1000 genomes]
rs71327010	1.00[AFR][1000 genomes]
rs71327014	1.00[AFR][1000 genomes]
rs71327015	1.00[AFR][1000 genomes]
rs71327017	1.00[AFR][1000 genomes]
rs71327021	1.00[AFR][1000 genomes]
rs71327023	1.00[AFR][1000 genomes]
rs71615437	1.00[AFR][1000 genomes]
rs71615438	1.00[AFR][1000 genomes]
rs7653372	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45912400-45922200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:45914400-45922200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:45914800-45924000	Enhancers	Thymus	Thymus
4	chr3:45916200-45922200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:45916600-45925200	Genic enhancers	Dnd41	blood
6	chr3:45916800-45922200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:45918400-45926000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:45918600-45920400	Weak transcription	K562	blood
9	chr3:45918600-45922400	Enhancers	Fetal Thymus	thymus
10	chr3:45919000-45922800	Enhancers	GM12878-XiMat	blood

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