Variant report

Variant	rs4339140
Chromosome Location	chr3:46094762-46094763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs13060287	0.91[ASN][1000 genomes]
rs13074382	0.91[ASN][1000 genomes]
rs13081213	0.91[ASN][1000 genomes]
rs13082697	0.91[ASN][1000 genomes]
rs13089855	0.91[ASN][1000 genomes]
rs13090194	0.91[ASN][1000 genomes]
rs13097556	0.91[ASN][1000 genomes]
rs13098366	0.88[EUR][1000 genomes]
rs2088690	0.91[ASN][1000 genomes]
rs2088692	0.91[ASN][1000 genomes]
rs2102055	0.91[ASN][1000 genomes]
rs2102056	0.91[ASN][1000 genomes]
rs2230322	0.91[ASN][1000 genomes]
rs34168660	0.91[ASN][1000 genomes]
rs34438204	0.91[ASN][1000 genomes]
rs34493660	0.91[ASN][1000 genomes]
rs34562820	0.91[ASN][1000 genomes]
rs34584867	0.91[ASN][1000 genomes]
rs34619093	0.91[ASN][1000 genomes]
rs34679077	0.91[ASN][1000 genomes]
rs34774687	0.91[ASN][1000 genomes]
rs34863575	0.91[ASN][1000 genomes]
rs35159820	0.91[ASN][1000 genomes]
rs35161099	0.91[ASN][1000 genomes]
rs35334665	0.83[ASN][1000 genomes]
rs35454877	0.91[ASN][1000 genomes]
rs35669129	0.91[ASN][1000 genomes]
rs35751180	0.91[ASN][1000 genomes]
rs35772789	0.80[ASN][1000 genomes]
rs35814488	0.91[ASN][1000 genomes]
rs35883205	0.91[ASN][1000 genomes]
rs35930050	0.91[ASN][1000 genomes]
rs35951367	0.88[EUR][1000 genomes]
rs36040135	0.91[ASN][1000 genomes]
rs3851346	0.91[ASN][1000 genomes]
rs4362758	0.91[ASN][1000 genomes]
rs55875328	0.91[ASN][1000 genomes]
rs60019065	0.91[ASN][1000 genomes]
rs61556067	0.91[ASN][1000 genomes]
rs61650989	0.91[ASN][1000 genomes]
rs67200151	0.91[ASN][1000 genomes]
rs6780028	0.91[ASN][1000 genomes]
rs6790866	0.91[ASN][1000 genomes]
rs6791016	0.91[ASN][1000 genomes]
rs68087193	0.91[ASN][1000 genomes]
rs71327006	0.91[ASN][1000 genomes]
rs71327007	0.91[ASN][1000 genomes]
rs71327009	0.89[ASN][1000 genomes]
rs71327010	0.91[ASN][1000 genomes]
rs876668	0.91[ASN][1000 genomes]
rs9838450	0.86[EUR][1000 genomes]
rs9845542	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46087600-46095800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:46093600-46095000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:46094200-46096200	Enhancers	Placenta	Placenta

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