Variant report

Variant	rs35951367
Chromosome Location	chr3:46118439-46118440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:45979007..45979682-chr3:46117842..46118764,2	MCF-7	breast:
2	chr3:45980083..45981150-chr3:46117757..46119043,6	MCF-7	breast:
3	chr3:45980561..45981539-chr3:46118125..46119072,2	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs12639314	0.83[EUR][1000 genomes]
rs13060287	0.82[ASN][1000 genomes]
rs13063527	0.94[ASN][1000 genomes]
rs13068570	0.94[ASN][1000 genomes]
rs13069742	1.00[ASN][1000 genomes]
rs13072267	1.00[ASN][1000 genomes]
rs13074382	0.82[ASN][1000 genomes]
rs13075528	0.94[ASN][1000 genomes]
rs13081213	0.82[ASN][1000 genomes]
rs13082697	0.82[ASN][1000 genomes]
rs13089554	0.94[ASN][1000 genomes]
rs13089855	0.82[ASN][1000 genomes]
rs13090194	0.82[ASN][1000 genomes]
rs13091868	0.97[ASN][1000 genomes]
rs13093179	0.94[ASN][1000 genomes]
rs13095602	0.94[ASN][1000 genomes]
rs13095717	0.94[ASN][1000 genomes]
rs13096741	1.00[ASN][1000 genomes]
rs13097556	0.82[ASN][1000 genomes]
rs13098366	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1491950	0.94[ASN][1000 genomes]
rs1491951	0.94[ASN][1000 genomes]
rs17215981	0.94[ASN][1000 genomes]
rs2088690	0.82[ASN][1000 genomes]
rs2088692	0.82[ASN][1000 genomes]
rs2102055	0.82[ASN][1000 genomes]
rs2102056	0.82[ASN][1000 genomes]
rs2230322	0.82[ASN][1000 genomes]
rs34047915	1.00[ASN][1000 genomes]
rs34093271	0.94[ASN][1000 genomes]
rs34127208	1.00[ASN][1000 genomes]
rs34168660	0.82[ASN][1000 genomes]
rs34339943	0.88[ASN][1000 genomes]
rs34340587	1.00[ASN][1000 genomes]
rs34438204	0.82[ASN][1000 genomes]
rs34452002	0.94[ASN][1000 genomes]
rs34460587	0.94[ASN][1000 genomes]
rs34492478	0.94[ASN][1000 genomes]
rs34493660	0.82[ASN][1000 genomes]
rs34562820	0.82[ASN][1000 genomes]
rs34584867	0.82[ASN][1000 genomes]
rs34619093	0.82[ASN][1000 genomes]
rs34679077	0.82[ASN][1000 genomes]
rs34718164	1.00[ASN][1000 genomes]
rs34766614	1.00[ASN][1000 genomes]
rs34774687	0.82[ASN][1000 genomes]
rs34863575	0.82[ASN][1000 genomes]
rs35110864	0.94[ASN][1000 genomes]
rs35159820	0.82[ASN][1000 genomes]
rs35161099	0.82[ASN][1000 genomes]
rs35454877	0.82[ASN][1000 genomes]
rs35464221	0.91[ASN][1000 genomes]
rs35516580	1.00[ASN][1000 genomes]
rs35539222	0.94[ASN][1000 genomes]
rs35669129	0.82[ASN][1000 genomes]
rs35751180	0.82[ASN][1000 genomes]
rs35772789	0.94[ASN][1000 genomes]
rs35814488	0.82[ASN][1000 genomes]
rs35883205	0.82[ASN][1000 genomes]
rs35930050	0.82[ASN][1000 genomes]
rs36040135	0.82[ASN][1000 genomes]
rs36057789	0.97[ASN][1000 genomes]
rs3851346	0.82[ASN][1000 genomes]
rs4339140	0.88[EUR][1000 genomes]
rs4362758	0.82[ASN][1000 genomes]
rs4373103	0.94[ASN][1000 genomes]
rs55875328	0.82[ASN][1000 genomes]
rs60019065	0.82[ASN][1000 genomes]
rs61556067	0.82[ASN][1000 genomes]
rs61650989	0.82[ASN][1000 genomes]
rs67200151	0.82[ASN][1000 genomes]
rs6780028	0.82[ASN][1000 genomes]
rs6790866	0.82[ASN][1000 genomes]
rs6791016	0.82[ASN][1000 genomes]
rs68087193	0.82[ASN][1000 genomes]
rs71327006	0.82[ASN][1000 genomes]
rs71327007	0.82[ASN][1000 genomes]
rs71327010	0.82[ASN][1000 genomes]
rs71327014	1.00[ASN][1000 genomes]
rs71327015	1.00[ASN][1000 genomes]
rs71327017	1.00[ASN][1000 genomes]
rs71327021	0.97[ASN][1000 genomes]
rs71327023	0.94[ASN][1000 genomes]
rs71327024	0.94[ASN][1000 genomes]
rs71327025	0.94[ASN][1000 genomes]
rs876668	0.82[ASN][1000 genomes]
rs9824651	1.00[ASN][1000 genomes]
rs9825081	1.00[ASN][1000 genomes]
rs9838450	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9845382	1.00[ASN][1000 genomes]
rs9845542	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877748	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46113200-46120000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr3:46113600-46120000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:46114200-46120000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr3:46115000-46120000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr3:46118400-46118600	Enhancers	GM12878-XiMat	blood
6	chr3:46118400-46119800	Weak transcription	Dnd41	blood

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