Variant report

Variant	rs57637386
Chromosome Location	chr6:29636329-29636330
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:29636072-29636402	HepG2	liver:	n/a	chr6:29636227-29636238

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29634001..29636635-chr6:29639490..29642126,2	K562	blood:

Variant related genes	Relation type
MOG	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28454267	1.00[EUR][1000 genomes]
rs29270	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs425997	0.82[ASN][1000 genomes]
rs56918232	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57245255	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58349531	0.86[ASN][1000 genomes]
rs6911622	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6934884	0.93[ASN][1000 genomes]
rs73404770	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73404772	0.93[ASN][1000 genomes]
rs73406513	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73406600	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73410967	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29625000-29663600	Weak transcription	Right Atrium	heart
2	chr6:29630800-29643200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:29631400-29640200	Weak transcription	NHEK	skin
4	chr6:29632000-29638600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:29633400-29636400	Enhancers	Fetal Heart	heart
6	chr6:29633600-29636600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:29633800-29636600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr6:29634600-29636400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:29634600-29641000	Weak transcription	Brain Anterior Caudate	brain
10	chr6:29634600-29642000	Weak transcription	Brain Angular Gyrus	brain
11	chr6:29635000-29636400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:29635200-29636600	Strong transcription	Brain Inferior Temporal Lobe	brain
13	chr6:29635600-29636600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:29635600-29636600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
15	chr6:29635600-29639600	Strong transcription	Brain Substantia Nigra	brain
16	chr6:29635800-29636400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:29635800-29636600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:29635800-29636600	Strong transcription	Brain Hippocampus Middle	brain
19	chr6:29636000-29636600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:29636000-29639800	Strong transcription	Brain Cingulate Gyrus	brain
21	chr6:29636200-29636400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr6:29636200-29636400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:29636200-29636600	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links