Variant report

Variant	rs73404770
Chromosome Location	chr6:29613622-29613623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28454267	0.86[EUR][1000 genomes]
rs29270	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs425997	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56918232	0.93[ASN][1000 genomes]
rs57245255	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57637386	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58349531	0.86[ASN][1000 genomes]
rs6911622	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6934884	0.93[ASN][1000 genomes]
rs73404772	0.93[ASN][1000 genomes]
rs73406513	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73406600	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73410967	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29608400-29616400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:29609600-29617200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:29609800-29615600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:29609800-29615600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:29610000-29615400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:29610000-29615400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:29610000-29615400	Weak transcription	HMEC	breast
8	chr6:29610000-29615400	Weak transcription	NHEK	skin
9	chr6:29610000-29615600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:29610000-29617200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:29610600-29617200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:29610600-29617400	Weak transcription	K562	blood
13	chr6:29610800-29617200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:29611400-29616800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:29612000-29616800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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