Variant report

Variant	rs576399437
Chromosome Location	chr6:140391904-140391905
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140385652..140387203-chr6:140390391..140391912,2	K562	blood:
2	chr6:140390060..140392664-chr6:140397671..140399616,2	MCF-7	breast:
3	chr6:140388648..140390950-chr6:140391151..140393468,2	MCF-7	breast:
4	chr6:139695731..139697417-chr6:140391415..140394003,2	MCF-7	breast:
5	chr6:140390402..140393143-chr6:140395064..140396701,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3473486	chr6:140380637-140392373	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	esv3473487	chr6:140380684-140392349	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	esv3473488	chr6:140380690-140392319	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	esv3473489	chr6:140380774-140392251	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	nsv823854	chr6:140385359-140392243	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
10	esv2504654	chr6:140390438-140391916	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140384400-140392800	Weak transcription	Aorta	Aorta
2	chr6:140384600-140392000	Weak transcription	HSMMtube	muscle
3	chr6:140384600-140392200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:140384600-140394000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:140386000-140392200	Weak transcription	Fetal Intestine Small	intestine
6	chr6:140390000-140395400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:140390000-140395400	Enhancers	NHDF-Ad	bronchial
8	chr6:140390200-140395400	Enhancers	NHLF	lung
9	chr6:140390400-140395000	Enhancers	Osteobl	bone
10	chr6:140390800-140394800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:140391000-140392400	Enhancers	Ovary	ovary
12	chr6:140391000-140392600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:140391200-140392000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:140391200-140393200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:140391200-140395000	Enhancers	Fetal Lung	lung
16	chr6:140391400-140392000	Enhancers	Fetal Muscle Leg	muscle
17	chr6:140391400-140392200	Enhancers	Stomach Smooth Muscle	stomach
18	chr6:140391400-140392800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:140391400-140393200	Enhancers	Colon Smooth Muscle	Colon
20	chr6:140391400-140393600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr6:140391400-140395000	Enhancers	Hela-S3	cervix
22	chr6:140391600-140392200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:140391600-140393600	Enhancers	Fetal Heart	heart
24	chr6:140391600-140394000	Enhancers	HUVEC	blood vessel
25	chr6:140391600-140395200	Enhancers	Rectal Smooth Muscle	rectum
26	chr6:140391800-140392000	Enhancers	Stomach Mucosa	stomach
27	chr6:140391800-140392200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:140391800-140392400	Weak transcription	Right Atrium	heart
29	chr6:140391800-140392600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr6:140391800-140393000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:140391800-140393000	Enhancers	Fetal Stomach	stomach
32	chr6:140391800-140393000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr6:140391800-140393800	Enhancers	Fetal Kidney	kidney
34	chr6:140391800-140393800	Enhancers	NH-A	brain
35	chr6:140391800-140394000	Enhancers	HSMM	muscle
36	chr6:140391800-140394400	Enhancers	Adipose Nuclei	Adipose
37	chr6:140391800-140395000	Enhancers	Fetal Brain Male	brain

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