Variant report

Variant	rs576425429
Chromosome Location	chr4:78522573-78522574
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr4:78521815-78522586	SK-N-SH	brain:	n/a	n/a
2	CTCF	chr4:78521865-78522575	HCT-116	colon:	n/a	n/a
3	CTCF	chr4:78521693-78523000	SK-N-SH	brain:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78521817..78522700-chr4:78619204..78620028,2	MCF-7	breast:
2	chr4:78306302..78306941-chr4:78521930..78522730,3	MCF-7	breast:
3	chr4:78521938..78522727-chr4:78539308..78540406,4	MCF-7	breast:
4	chr4:78522249..78524588-chr4:78525171..78527688,2	MCF-7	breast:
5	chr4:78385938..78387056-chr4:78521715..78522661,6	MCF-7	breast:
6	chr4:78394741..78395310-chr4:78522044..78522649,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1010104	chr4:78520674-78553754	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78521200-78523600	Enhancers	Liver	Liver
2	chr4:78522200-78523600	Enhancers	HMEC	breast
3	chr4:78522400-78523000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:78522400-78523400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:78522400-78523800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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