Variant report

Variant	rs57656182
Chromosome Location	chr1:168948492-168948493
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55641048	1.00[AFR][1000 genomes]
rs55983112	1.00[AFR][1000 genomes]
rs56991656	1.00[AFR][1000 genomes]
rs74123066	1.00[AFR][1000 genomes]
rs74123069	1.00[AFR][1000 genomes]
rs74123071	1.00[AMR][1000 genomes]
rs74123073	1.00[AFR][1000 genomes]
rs74123075	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168941200-168949200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr1:168943800-168949200	Weak transcription	Gastric	stomach
3	chr1:168945800-168948800	Weak transcription	Fetal Lung	lung
4	chr1:168945800-168949200	Weak transcription	Stomach Mucosa	stomach
5	chr1:168946800-168948600	Enhancers	Brain Angular Gyrus	brain
6	chr1:168946800-168948800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr1:168947000-168949200	Enhancers	Brain Cingulate Gyrus	brain
8	chr1:168948000-168948800	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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