Variant report

Variant	rs74123066
Chromosome Location	chr1:168941313-168941314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168875814..168878079-chr1:168940706..168942941,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55641048	1.00[AFR][1000 genomes]
rs55855418	1.00[AMR][1000 genomes]
rs55875259	1.00[AMR][1000 genomes]
rs55983112	1.00[AFR][1000 genomes]
rs56991656	1.00[AFR][1000 genomes]
rs57656182	1.00[AFR][1000 genomes]
rs59151073	1.00[AFR][1000 genomes]
rs59367850	1.00[AMR][1000 genomes]
rs74123069	1.00[AFR][1000 genomes]
rs74123073	1.00[AFR][1000 genomes]
rs74123075	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168939800-168941600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:168939800-168942400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:168939800-168942400	Enhancers	Ovary	ovary
4	chr1:168939800-168943000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:168940000-168942600	Enhancers	Fetal Lung	lung
6	chr1:168940200-168942000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr1:168940400-168941600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:168940400-168942000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr1:168940600-168941800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:168940800-168942000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:168940800-168942000	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:168940800-168942000	Weak transcription	Fetal Muscle Leg	muscle
13	chr1:168940800-168942000	Weak transcription	Psoas Muscle	Psoas
14	chr1:168940800-168942600	Weak transcription	Right Ventricle	heart
15	chr1:168940800-168943200	Weak transcription	Aorta	Aorta
16	chr1:168941000-168942000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr1:168941000-168942000	Weak transcription	Brain Substantia Nigra	brain
18	chr1:168941000-168942000	Weak transcription	Fetal Stomach	stomach
19	chr1:168941000-168942000	Weak transcription	Left Ventricle	heart
20	chr1:168941000-168942200	Weak transcription	Right Atrium	heart
21	chr1:168941000-168942400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr1:168941000-168945800	Weak transcription	Brain Angular Gyrus	brain
23	chr1:168941000-168946800	Weak transcription	Brain Hippocampus Middle	brain
24	chr1:168941000-168947000	Weak transcription	Brain Anterior Caudate	brain
25	chr1:168941200-168942000	Weak transcription	Pancreas	Pancrea
26	chr1:168941200-168949200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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